Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1719.5 890 100.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1608.2 890 94.9
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1510.7 886 88.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1466.4 885 84.4
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1390.9 885 78.3
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1386.7 884 81.4
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1365.1 886 76.3
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1362.4 886 80.1
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1360.9 886 80.1
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1357.4 886 79.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1357.4 885 78.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1356.3 884 75.9
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1352.8 884 75.6
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1352.8 884 75.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1350.1 884 79.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1343.2 885 74.9
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1342.4 885 74.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 885 77.3
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1334.7 885 75.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1330.9 886 74.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1328.9 885 78.2
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1328.2 903 73.3
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1326.6 884 75.0
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1324.7 887 77.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1320.4 885 74.4
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 919 72.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1316.2 892 74.2
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1315.4 885 74.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1311.6 885 74.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1308.5 885 73.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1307.0 886 73.0
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1306.2 887 75.0
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1305.8 885 73.4
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1303.1 886 73.8
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1297.7 886 75.3
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1295.0 885 76.2
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1294.3 856 76.9
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1291.6 885 72.4
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1289.2 887 75.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1288.1 885 72.3
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1288.1 884 72.7
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1285.8 887 75.5
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1284.6 885 76.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1284.2 885 75.8
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1283.9 885 72.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1283.1 884 73.4
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 886 72.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 885 71.9
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1279.2 884 74.9
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1279.2 859 75.1
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1277.7 887 72.5
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 885 72.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1263.1 885 70.5
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1253.0 885 73.8
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 886 68.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1238.8 885 70.1
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1237.6 885 70.2
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1228.8 885 70.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1226.5 887 69.1
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1221.8 942 69.6
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1217.6 950 65.8
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 884 72.3
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1211.1 884 68.3
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1209.5 885 70.2
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 885 67.3
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 885 67.0
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1200.3 886 67.3
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1195.3 886 67.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1187.2 887 65.6
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1185.6 1029 60.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1182.9 885 68.5
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1168.7 895 66.6
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1166.0 886 65.5
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 973 63.2
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1157.9 886 65.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1157.1 886 64.6
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1155.2 886 65.2
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1150.6 817 72.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1149.8 886 64.7
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1148.3 886 64.6
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1146.7 886 64.3
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1146.7 886 64.6
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1143.6 886 64.0
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1142.5 886 64.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1139.8 886 66.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1131.7 961 66.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 914 65.5
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1127.5 933 61.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 895 62.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 905 61.8
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1113.2 886 62.8
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1079.7 885 61.2
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1077.8 773 72.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.8e-311 1072.4 814 70.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.1e-308 1063.1 917 60.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 9.3e-303 1043.5 717 73.1
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.6e-286 989.6 672 73.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.1e-270 936.0 648 76.4
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.1e-258 895.2 904 49.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.0e-256 890.6 900 51.6
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.1e-255 887.1 900 49.6
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 5.4e-218 761.9 894 43.3
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.1e-217 760.0 905 49.8
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.6e-215 751.9 583 67.1
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.7e-200 703.7 520 68.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.4e-197 694.1 580 60.3
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 2.8e-190 669.8 979 41.8
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.3e-184 650.2 381 81.1
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.0e-180 637.1 508 64.6
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 6.9e-173 612.1 870 42.8
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 2.0e-172 610.5 507 59.8
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 7.2e-170 602.1 441 68.7
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 9.7e-167 591.7 527 56.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.7e-150 537.7 327 80.1
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 7.3e-122 442.6 640 41.7
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.3e-118 429.1 404 54.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.0e-91 340.9 236 70.8
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.9e-78 297.0 188 75.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 5.4e-77 293.5 404 43.6
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.4e-69 268.9 637 29.0
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.3e-62 245.7 664 28.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.4e-56 225.7 216 57.4
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.1e-36 157.1 126 61.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 6.7e-35 153.7 155 52.3
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 6.3e-33 147.1 97 71.1
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 6.3e-33 147.1 563 25.2
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 5.0e-30 137.5 127 54.3
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.5e-30 136.7 94 64.9
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.4e-24 119.4 685 20.0
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.4e-24 119.4 113 58.4
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.8e-17 95.1 131 41.2
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 8.3e-17 93.6 78 61.5
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.4e-16 92.0 92 50.0
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 9.5e-13 80.1 46 78.3
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.2e-07 63.2 85 47.1
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 4.5e-07 61.2 38 81.6
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.9e-06 58.5 28 89.3


User provided reference genes

Program Settings