Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.9e-251 870.2 502 100.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 8.3e-107 391.7 274 97.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.2e-81 308.1 293 72.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 4.6e-81 306.2 293 71.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 8.6e-80 302.0 292 69.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.6e-78 297.7 204 80.9
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.0e-76 290.8 282 74.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.4e-75 285.8 291 68.4
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.4e-75 285.8 230 71.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 8.4e-75 285.4 284 69.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 8.4e-75 285.4 284 69.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.4e-75 285.4 240 72.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.5e-73 280.0 285 69.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.3e-72 278.1 281 71.5
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.6e-72 275.8 234 66.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 8.7e-72 275.4 285 69.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.5e-71 273.9 214 75.7
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 9.6e-71 271.9 191 77.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.8e-70 270.4 153 90.2
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.6e-70 270.0 282 70.9
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.6e-70 270.0 299 64.2
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 6.2e-70 269.2 250 68.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 6.2e-70 269.2 152 92.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.1e-69 268.5 153 88.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-69 268.1 226 73.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.4e-69 268.1 152 93.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.8e-69 267.7 226 78.3
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.1e-69 266.9 152 90.8
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.0e-69 266.5 225 68.9
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 5.3e-69 266.2 302 63.6
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 5.3e-69 266.2 152 91.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 5.3e-69 266.2 152 90.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.9e-69 265.8 186 84.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.9e-69 265.8 287 70.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 6.9e-69 265.8 153 90.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.2e-68 265.0 287 66.2
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.2e-68 265.0 295 65.8
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.5e-68 264.6 152 91.4
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.0e-68 264.2 186 78.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.4e-68 263.5 153 90.2
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.4e-68 263.5 152 90.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-68 263.5 152 90.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.4e-68 263.5 152 90.1
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.4e-68 263.5 146 93.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.4e-68 263.1 153 90.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.4e-68 263.1 152 90.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.4e-68 263.1 153 88.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.4e-68 263.1 283 72.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.8e-68 262.7 186 84.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 5.8e-68 262.7 152 90.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 5.8e-68 262.7 152 90.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.8e-68 262.7 152 89.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.8e-68 262.7 228 78.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 5.8e-68 262.7 154 89.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 7.6e-68 262.3 191 75.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 7.6e-68 262.3 152 88.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.3e-67 261.5 186 75.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-67 261.5 153 89.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.3e-67 261.5 295 65.1
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.3e-67 261.5 298 65.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.3e-67 261.5 272 75.4
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.7e-67 261.2 292 65.4
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.7e-67 261.2 152 90.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.2e-67 260.8 232 66.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.2e-67 260.8 223 66.8
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 2.2e-67 260.8 182 76.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.9e-67 260.4 283 69.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.8e-67 260.0 285 68.1
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.8e-67 260.0 286 71.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.9e-67 259.6 189 75.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 6.4e-67 259.2 216 76.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.4e-67 258.8 287 63.8
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-66 258.5 288 66.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.1e-66 258.5 153 87.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.4e-66 258.1 190 75.3
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-66 257.7 153 85.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-66 257.7 153 89.5
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.9e-66 257.7 284 69.4
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-66 257.3 224 71.4
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-66 257.3 224 71.4
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.4e-66 257.3 286 62.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.4e-66 257.3 153 87.6
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 3.2e-66 256.9 225 66.7
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-66 256.9 282 61.7
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.2e-66 256.5 305 66.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 5.4e-66 256.1 223 70.0
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.4e-66 256.1 152 88.8
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 7.1e-66 255.8 153 85.6
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 7.1e-66 255.8 213 77.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-65 255.0 220 70.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-65 255.0 201 72.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.7e-65 253.8 284 65.5
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.5e-65 253.4 148 87.2
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-65 253.4 185 76.2
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.5e-65 253.4 185 76.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.5e-65 253.4 293 64.2
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.6e-65 253.1 284 65.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.8e-65 252.3 153 83.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-64 251.5 153 85.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-64 251.1 281 72.2
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.9e-64 250.0 224 64.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.1e-64 249.6 151 84.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.1e-64 249.6 151 84.1
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.1e-64 249.6 157 85.4
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 8.7e-64 248.8 232 65.5
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.7e-64 248.8 232 65.5
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 8.7e-64 248.8 153 84.3
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-63 248.4 153 84.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.3e-63 246.9 303 61.4
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.3e-63 245.7 229 73.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 7.3e-63 245.7 153 84.3
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 9.6e-63 245.4 217 68.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.6e-63 245.4 153 83.7
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 9.6e-63 245.4 230 71.7
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.6e-62 244.6 297 62.3
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-62 244.2 231 64.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.8e-62 243.8 286 66.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.8e-62 243.0 154 82.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.1e-61 241.9 300 65.0
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.1e-61 241.9 291 72.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.4e-61 241.5 227 64.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.1e-61 240.4 145 85.5
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.1e-61 240.4 153 83.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 4.0e-61 240.0 153 83.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.2e-59 234.2 131 91.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.2e-59 234.2 153 81.7
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.9e-59 233.0 222 75.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 4.9e-59 233.0 143 83.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.2e-58 230.3 153 81.7
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 9.3e-58 228.8 292 69.2
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.9e-56 223.4 226 68.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.5e-55 220.7 147 80.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 7.4e-55 219.2 137 81.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 3.4e-52 210.3 211 59.7
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.8e-51 206.8 189 63.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 6.4e-51 206.1 281 58.4
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 6.4e-51 206.1 281 58.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 9.3e-50 202.2 224 54.5
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.1e-49 201.1 121 86.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.0e-48 197.2 127 81.9
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-47 195.3 207 58.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 8.2e-46 189.1 153 66.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-45 188.0 122 82.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 6.9e-45 186.0 152 69.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.6e-44 184.1 158 67.1
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-43 181.0 196 56.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 7.1e-42 176.0 125 74.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 4.6e-41 173.3 152 63.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.5e-39 168.3 188 53.7
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 5.3e-37 159.8 147 62.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 5.3e-37 159.8 94 85.1
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 6.5e-35 152.9 110 75.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.3e-30 136.3 153 53.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-29 135.6 181 48.1
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-28 131.7 245 43.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-28 131.7 245 43.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.9e-27 127.5 139 53.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.8e-22 110.9 141 48.2
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-18 98.6 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.4e-13 82.0 40 100.0
Haze_20296 Corylus avellana HOM05D027667 ORTHO05D017803 5.3e-13 80.1 105 35.2
Haze_18970 Corylus avellana HOM05D027667 ORTHO05D009135 1.2e-12 79.0 79 45.6
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.9e-12 76.6 51 76.5
Haze_16537 Corylus avellana HOM05D027667 ORTHO05D009135 8.5e-11 72.8 72 41.7
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.2e-10 70.9 154 40.9
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 5.5e-10 70.1 44 79.5
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 3.4e-07 60.8 84 40.5
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 7.5e-07 59.7 65 53.8
Cfa006404 Carpinus fangiana HOM05D027667 ORTHO05D009135 3.7e-06 57.4 73 42.5


User provided reference genes

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