Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1692.6 855 100.0
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1442.9 850 85.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1407.9 856 82.8
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 853 75.0
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1310.4 855 75.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1283.9 861 72.7
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1283.1 853 73.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1279.2 863 73.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1276.9 863 72.8
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1276.2 862 72.6
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 858 73.0
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1267.7 858 73.2
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1267.3 863 71.7
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1265.8 868 71.2
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1262.3 856 72.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1261.9 856 72.1
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1261.9 856 72.1
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1261.5 857 73.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1261.1 858 72.3
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1258.4 871 70.8
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1239.9 861 69.1
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 859 71.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 858 71.8
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1238.8 861 69.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1234.6 859 71.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1231.9 861 70.6
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1229.9 863 70.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1229.2 859 70.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 880 68.0
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 863 69.2
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1226.5 921 67.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1226.1 863 70.8
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1225.3 859 71.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1223.0 857 70.7
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1221.1 858 70.4
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1218.4 856 69.6
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1218.4 862 69.3
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1218.0 860 69.7
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 895 66.5
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1214.1 864 69.7
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1212.2 861 70.4
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1212.2 862 69.3
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 863 69.1
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1208.4 884 68.3
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 861 69.5
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1206.0 861 67.9
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1204.9 861 68.2
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 857 69.5
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 861 67.9
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 904 67.4
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 862 68.7
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1201.0 861 68.4
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1199.1 863 68.6
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1198.7 861 69.5
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1196.4 864 68.2
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1196.0 861 69.5
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1195.6 859 67.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1192.2 861 69.6
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1191.8 862 68.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1187.6 1002 61.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1186.0 860 67.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1184.5 856 67.9
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 854 68.4
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 858 67.7
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 943 63.6
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1169.5 871 67.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1167.5 850 67.2
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1167.1 827 68.4
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1161.4 850 67.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1161.0 862 67.3
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1160.6 851 66.9
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1160.2 861 67.6
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1160.2 851 66.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1158.3 851 66.7
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 851 66.7
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 876 65.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1156.4 861 67.5
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1156.4 853 66.5
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 851 66.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 836 68.5
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1155.6 850 66.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 850 66.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1152.5 864 67.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1132.1 897 63.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1129.4 852 64.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1124.8 884 65.3
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 850 65.3
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1121.7 858 66.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1113.2 860 64.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1097.0 790 68.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 885 62.9
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 3.5e-307 1058.1 862 60.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 7.8e-299 1030.4 689 74.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 9.3e-284 980.3 935 57.2
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.3e-277 959.9 747 66.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.8e-277 958.4 787 63.9
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 8.7e-274 947.2 878 53.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.3e-269 933.3 876 53.7
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 8.2e-264 914.1 648 69.6
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 4.5e-262 908.3 873 51.9
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.0e-241 839.7 626 68.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 7.5e-225 784.6 859 44.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.7e-214 749.6 580 66.9
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.0e-205 718.8 878 46.4
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 4.3e-204 715.7 552 65.4
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 5.6e-204 715.3 953 40.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 8.3e-192 674.9 494 70.0
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 6.4e-184 648.7 486 67.1
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 4.2e-183 646.0 837 44.7
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.3e-172 609.4 480 60.8
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.6e-169 598.6 378 73.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 3.5e-166 589.7 501 59.9
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.2e-159 566.6 444 65.3
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.4e-138 497.3 326 72.7
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.2e-129 468.4 614 45.6
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-129 466.8 373 62.7
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.1e-87 328.9 214 73.4
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.2e-81 308.9 162 87.7
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.3e-80 304.7 384 48.4
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 5.4e-66 256.9 698 27.9
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.4e-61 242.3 641 28.4
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.7e-48 196.8 156 63.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 7.4e-39 166.8 537 26.6
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.5e-35 153.7 125 57.6
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-33 148.7 154 49.4
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.3e-30 137.1 656 20.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-29 135.2 97 64.9
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 2.6e-28 131.7 119 53.8
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 4.5e-28 131.0 97 57.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.7e-22 111.3 115 51.3
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 5.0e-19 100.9 80 58.8
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.1e-17 94.0 42 95.2
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.8e-16 92.4 138 38.4
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.8e-11 74.7 77 51.9
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.2e-06 58.9 39 64.1


User provided reference genes

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