Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-64 248.8 127 100.0
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 4.9e-32 141.4 77 93.5
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 4.9e-32 141.4 77 93.5
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 4.9e-32 141.4 77 93.5
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 4.9e-32 141.4 77 93.5
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 4.9e-32 141.4 77 93.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.9e-32 141.4 77 93.5
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 4.9e-32 141.4 77 93.5
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 9.6e-28 127.1 73 86.3
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 9.6e-28 127.1 111 65.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 9.6e-28 127.1 73 86.3
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 2.8e-27 125.6 72 87.5
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 4.8e-27 124.8 73 84.9
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 4.8e-27 124.8 73 83.6
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 6.2e-27 124.4 73 84.9
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 8.2e-27 124.0 72 84.7
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 8.2e-27 124.0 72 86.1
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.2e-27 124.0 72 86.1
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 8.2e-27 124.0 73 84.9
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 8.2e-27 124.0 72 84.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.1e-26 123.6 72 83.3
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.1e-26 123.6 73 83.6
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.4e-26 123.2 72 83.3
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.8e-26 122.9 72 84.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.8e-26 122.9 72 84.7
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-26 122.9 72 84.7
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.4e-26 122.5 72 84.7
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 2.4e-26 122.5 85 70.6
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.1e-26 122.1 72 83.3
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.1e-26 122.1 72 83.3
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 3.1e-26 122.1 72 83.3
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 3.1e-26 122.1 71 84.5
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 4.0e-26 121.7 72 83.3
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 4.0e-26 121.7 71 84.5
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.3e-26 121.3 72 83.3
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 5.3e-26 121.3 73 80.8
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 5.3e-26 121.3 69 87.0
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 6.9e-26 120.9 72 81.9
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 9.0e-26 120.6 68 88.2
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 9.0e-26 120.6 71 84.5
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 9.0e-26 120.6 71 84.5
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 9.0e-26 120.6 71 84.5
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 9.0e-26 120.6 72 84.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 9.0e-26 120.6 72 81.9
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.5e-25 119.8 71 85.9
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 2.0e-25 119.4 73 80.8
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 2.0e-25 119.4 72 83.3
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.0e-25 119.4 72 81.9
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 3.4e-25 118.6 72 80.6
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 3.4e-25 118.6 73 82.2
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 3.4e-25 118.6 72 80.6
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 4.5e-25 118.2 68 86.8
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 4.5e-25 118.2 71 83.1
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 5.8e-25 117.9 70 84.3
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 5.8e-25 117.9 64 93.8
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 5.8e-25 117.9 64 93.8
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 5.8e-25 117.9 64 93.8
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 5.8e-25 117.9 64 93.8
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.7e-24 116.3 72 77.8
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.7e-24 116.3 72 79.2
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.7e-24 116.3 82 76.8
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 2.2e-24 115.9 73 75.3
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.9e-24 115.5 73 78.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 2.9e-24 115.5 72 79.2
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.9e-24 115.5 73 78.1
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 2.9e-24 115.5 72 79.2
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 2.9e-24 115.5 72 79.2
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 2.9e-24 115.5 72 79.2
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 2.9e-24 115.5 72 79.2
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 2.9e-24 115.5 72 79.2
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 4.9e-24 114.8 71 84.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 4.9e-24 114.8 72 80.6
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.1e-23 113.6 70 81.4
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 4.2e-23 111.7 64 90.6
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.1e-23 110.9 66 83.3
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 2.7e-22 109.0 64 85.9
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 6.0e-22 107.8 73 78.1
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 1.3e-21 106.7 64 85.9
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.8e-21 106.3 62 87.1
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.8e-21 106.3 67 79.1
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 1.8e-21 106.3 63 84.1
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 6.7e-21 104.4 65 76.9
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 8.7e-21 104.0 63 84.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.9e-20 102.8 74 74.3
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 3.3e-20 102.1 59 84.7
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 5.7e-20 101.3 61 83.6
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 9.7e-20 100.5 70 71.4
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 3.7e-19 98.6 61 80.3
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 6.3e-19 97.8 64 76.6
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 2.4e-18 95.9 60 80.0
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 4.1e-18 95.1 52 92.3
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.1e-18 95.1 64 79.7
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 6.9e-18 94.4 63 74.6
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 2.9e-16 89.0 53 81.1
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 5.0e-16 88.2 54 77.8
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.5e-16 87.8 57 80.7
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 6.5e-16 87.8 70 62.9
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.4e-15 86.7 54 75.9
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.4e-15 86.7 57 73.7
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 1.4e-15 86.7 59 74.6
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 1.9e-15 86.3 72 65.3
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.9e-15 86.3 52 78.8
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.9e-15 86.3 52 78.8
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 2.5e-15 85.9 54 75.9
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.2e-15 85.5 59 71.2
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.2e-15 85.5 60 70.0
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.2e-15 85.1 52 78.8
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.4e-15 84.0 51 78.4
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.4e-15 84.0 51 78.4
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.4e-15 84.0 51 78.4
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 9.4e-15 84.0 51 78.4
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.2e-14 83.6 51 76.5
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 7.9e-14 80.9 51 76.5
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 1.8e-13 79.7 52 73.1
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 6.7e-13 77.8 51 72.5
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-12 76.3 45 86.7
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 3.3e-12 75.5 45 86.7
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 4.3e-12 75.1 51 70.6
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-11 72.8 40 92.5
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 3.7e-11 72.0 41 85.4
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 4.8e-11 71.6 45 82.2
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.8e-11 71.6 43 79.1
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 8.2e-11 70.9 42 83.3
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.4e-10 69.3 40 82.5
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.4e-10 69.3 40 82.5
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.4e-10 69.3 40 82.5
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 4.1e-10 68.6 51 68.6
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 5.3e-10 68.2 63 60.3
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 5.3e-10 68.2 40 80.0
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.5e-09 66.6 43 76.7
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 5.9e-09 64.7 71 50.7
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 5.0e-08 61.6 36 83.3
CARHR056710 Cardamine hirsuta HOM05D000216 ORTHO05D000634 8.5e-08 60.8 40 72.5
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-06 57.0 72 47.2
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.1e-06 56.2 34 76.5
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.7e-06 55.8 29 93.1
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.1e-06 54.7 36 75.0


User provided reference genes

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