Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0161801 Helianthus annuus HOM05D000399 ORTHO05D018858 6.4e-70 267.3 137 100.0
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 4.6e-44 181.4 98 90.8
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.1e-26 123.6 99 61.6
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 1.8e-19 99.8 110 52.7
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 4.0e-19 98.6 109 52.3
Lsat_1_v5_gn_0_18380 Lactuca sativa HOM05D000399 ORTHO05D000304 2.6e-18 95.9 99 51.5
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 1.3e-17 93.6 109 49.5
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.8e-17 91.7 99 50.5
CSS0017364 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.8e-17 91.7 99 50.5
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 8.3e-17 90.9 109 44.0
Lsat_1_v5_gn_0_14741 Lactuca sativa HOM05D000399 ORTHO05D000304 1.4e-16 90.1 99 48.5
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.4e-16 89.4 109 47.7
Nitab4.5_0006561g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.4e-16 89.4 109 47.7
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 2.4e-16 89.4 103 52.4
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 4.1e-16 88.6 98 46.9
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 4.1e-16 88.6 109 46.8
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 5.3e-16 88.2 97 49.5
CAN.G321.27 Capsicum annuum HOM05D000399 ORTHO05D000304 5.3e-16 88.2 109 45.9
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.3e-16 88.2 98 45.9
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.6e-15 86.7 98 45.9
Oeu034993.1 Olea europaea HOM05D000399 ORTHO05D000304 1.6e-15 86.7 99 46.5
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.0e-15 86.3 109 42.2
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.7e-15 85.9 98 43.9
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 3.5e-15 85.5 107 45.8
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.5e-15 85.5 109 42.2
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 3.5e-15 85.5 109 47.7
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 3.5e-15 85.5 99 48.5
Sopen11g017590 Solanum pennellii HOM05D000399 ORTHO05D000304 3.5e-15 85.5 109 45.9
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 4.5e-15 85.1 107 45.8
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 5.9e-15 84.7 134 38.8
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 7.7e-15 84.3 98 44.9
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 7.7e-15 84.3 118 40.7
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.0e-14 84.0 98 43.9
DCAR_001171 Daucus carota HOM05D000399 ORTHO05D000304 1.3e-14 83.6 99 43.4
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.3e-14 83.6 109 42.2
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.3e-14 83.6 109 42.2
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 2.2e-14 82.8 98 42.9
DCAR_010108 Daucus carota HOM05D000399 ORTHO05D000304 3.8e-14 82.0 99 42.4
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.8e-14 82.0 109 41.3
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.0e-14 81.6 108 46.3
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 6.5e-14 81.3 96 42.7
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.1e-13 80.5 109 40.4
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 1.5e-13 80.1 97 44.3
Actinidia03256 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.9e-13 79.7 109 43.1
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.9e-13 79.7 96 41.7
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 2.5e-13 79.3 108 41.7
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 3.2e-13 79.0 98 42.9
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 3.2e-13 79.0 97 45.4
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 4.2e-13 78.6 109 41.3
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 5.5e-13 78.2 109 40.4
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 7.2e-13 77.8 99 43.4
DCAR_012419 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-12 77.0 97 43.3
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-12 77.0 109 38.5
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 2.1e-12 76.3 98 41.8
TAR374G0248 Trochodendron aralioides HOM05D000399 ORTHO05D000304 2.1e-12 76.3 102 41.2
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.7e-12 75.9 109 40.4
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 2.7e-12 75.9 92 45.7
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.7e-12 75.9 95 44.2
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 4.7e-12 75.1 97 42.3
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 4.7e-12 75.1 99 42.4
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 6.1e-12 74.7 111 41.4
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 6.1e-12 74.7 127 40.2
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 6.1e-12 74.7 109 38.5
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 8.0e-12 74.3 111 39.6
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 8.0e-12 74.3 109 38.5
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 1.0e-11 73.9 109 38.5
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 1.0e-11 73.9 97 42.3
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 1.4e-11 73.6 97 42.3
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.8e-11 73.2 107 42.1
Nn4g22024 Nelumbo nucifera HOM05D000399 ORTHO05D000304 2.3e-11 72.8 106 38.7
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 3.0e-11 72.4 98 40.8
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 4.0e-11 72.0 127 36.2
Psat1g166760 Pisum sativum HOM05D000399 ORTHO05D000304 4.0e-11 72.0 134 35.8
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.2e-11 71.6 111 39.6
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 5.2e-11 71.6 94 44.7
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 6.8e-11 71.2 97 42.3
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.8e-11 71.2 104 43.3
BcaC05g29878 Brassica carinata HOM05D000399 ORTHO05D000304 8.8e-11 70.9 108 39.8
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 8.8e-11 70.9 108 39.8
CAN.G295.4 Capsicum annuum HOM05D000399 ORTHO05D018858 8.8e-11 70.9 89 44.9
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 1.2e-10 70.5 122 37.7
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.5e-10 70.1 95 42.1
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 1.5e-10 70.1 97 39.2
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.0e-10 69.7 94 41.5
DCAR_006124 Daucus carota HOM05D000399 ORTHO05D000304 2.0e-10 69.7 98 39.8
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 2.0e-10 69.7 96 37.5
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.0e-10 69.7 97 38.1
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 2.0e-10 69.7 131 35.9
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 3.4e-10 68.9 107 39.3
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.4e-10 68.9 95 42.1
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.4e-10 68.6 95 42.1
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 5.7e-10 68.2 109 38.5
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.7e-10 68.2 97 39.2
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 5.7e-10 68.2 97 40.2
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.7e-10 68.2 115 37.4
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 5.7e-10 68.2 97 39.2
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 7.5e-10 67.8 109 37.6
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 7.5e-10 67.8 109 37.6
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 7.5e-10 67.8 98 37.8
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 7.5e-10 67.8 92 42.4
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.5e-10 67.8 92 42.4
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.5e-10 67.8 92 42.4
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 7.5e-10 67.8 98 35.7
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 7.5e-10 67.8 92 44.6
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 7.5e-10 67.8 94 41.5
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 9.8e-10 67.4 108 38.0
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 9.8e-10 67.4 96 40.6
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 9.8e-10 67.4 97 37.1
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 9.8e-10 67.4 110 38.2
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 9.8e-10 67.4 94 40.4
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.3e-09 67.0 94 36.2
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.3e-09 67.0 109 35.8
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 1.3e-09 67.0 109 36.7
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.3e-09 67.0 97 39.2
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 1.3e-09 67.0 96 37.5
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.2e-09 66.2 96 40.6
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 2.2e-09 66.2 117 33.3
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.7e-09 65.5 97 40.2
PGSC0003DMG400007430 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.7e-09 65.5 109 41.3
VMungo0540G2370 Vigna mungo HOM05D000399 ORTHO05D000304 3.7e-09 65.5 94 39.4
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 8.3e-09 64.3 109 35.8
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.4e-08 62.8 114 36.0
C05p63500 Brassica napus HOM05D000399 ORTHO05D000304 2.4e-08 62.8 131 30.5
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 3.1e-08 62.4 114 36.0
HPP92_020100 Vanilla planifolia HOM05D000399 ORTHO05D000304 5.4e-08 61.6 98 35.7
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 7.0e-08 61.2 97 38.1
CDE05G2995 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 7.0e-08 61.2 94 39.4
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 9.1e-08 60.8 81 43.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.6e-07 60.1 109 32.1
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 4.5e-07 58.5 65 41.5
Zm00001eb219690 Zea mays HOM05D000399 ORTHO05D000304 6.6e-06 54.7 95 37.9


User provided reference genes

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