Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 3.0e-274 948.0 500 100.0
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.8e-154 550.1 470 66.8
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 4.2e-127 459.1 317 76.7
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 1.8e-114 417.2 339 67.3
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 5.3e-114 415.6 375 59.2
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 3.5e-113 412.9 346 65.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.9e-111 407.1 325 67.1
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 9.4e-111 404.8 384 59.1
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 8.0e-110 401.7 352 61.6
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 5.2e-109 399.1 317 64.7
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 5.2e-109 399.1 345 59.7
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 5.2e-109 399.1 324 64.2
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 8.8e-109 398.3 338 62.7
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 1.2e-108 397.9 351 61.5
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.2e-108 397.9 340 62.1
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.5e-108 397.5 351 61.5
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.0e-108 397.1 395 55.9
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 2.6e-108 396.7 311 65.9
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 9.8e-108 394.8 348 61.2
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 9.8e-108 394.8 343 62.7
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.3e-107 394.4 322 62.4
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 2.2e-107 393.7 300 66.7
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.8e-107 393.3 302 67.9
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.8e-107 393.3 302 67.9
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 4.8e-107 392.5 354 61.0
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 4.8e-107 392.5 304 66.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 1.8e-106 390.6 356 61.2
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.8e-106 390.6 303 67.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 3.1e-106 389.8 304 66.1
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 3.1e-106 389.8 316 64.2
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 4.1e-106 389.4 305 66.9
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 4.1e-106 389.4 343 63.0
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 5.4e-106 389.0 305 66.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.2e-105 387.9 297 67.0
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.2e-105 387.9 347 61.4
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.7e-105 386.7 366 61.2
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 3.5e-105 386.3 336 61.9
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.5e-105 386.3 300 65.7
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 7.7e-105 385.2 295 66.1
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 7.7e-105 385.2 290 67.9
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.0e-104 384.8 373 58.7
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.3e-104 384.4 394 55.8
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 5.0e-104 382.5 297 64.3
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 5.0e-104 382.5 304 65.8
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.5e-104 381.7 297 64.3
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 8.5e-104 381.7 345 59.4
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.1e-103 381.3 420 51.9
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 1.5e-103 380.9 356 61.0
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.5e-103 380.9 292 66.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.9e-103 380.6 367 58.6
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.5e-103 380.2 373 57.1
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 4.2e-103 379.4 347 61.4
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 4.2e-103 379.4 350 57.1
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.2e-102 377.9 292 66.4
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 2.7e-102 376.7 288 65.6
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.7e-102 376.7 292 65.4
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.0e-101 374.8 351 58.1
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 1.4e-101 374.4 260 70.4
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.0e-101 373.2 388 54.6
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 3.0e-101 373.2 333 59.5
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 5.2e-101 372.5 342 59.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 5.2e-101 372.5 434 50.0
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 1.2e-100 371.3 297 64.0
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 1.2e-100 371.3 297 64.0
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.5e-100 370.9 293 64.2
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 2.6e-100 370.2 314 62.7
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.6e-100 370.2 357 58.3
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 4.4e-100 369.4 333 60.7
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.4e-100 369.4 299 64.9
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 4.4e-100 369.4 440 50.0
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 5.7e-100 369.0 360 58.6
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 7.5e-100 368.6 312 60.9
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.3e-99 367.9 404 50.2
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.2e-99 367.1 340 59.4
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 4.9e-99 365.9 332 58.7
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 6.3e-99 365.5 362 50.8
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 7.0e-98 362.1 303 63.7
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 9.1e-98 361.7 328 59.8
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 9.1e-98 361.7 270 65.9
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 4.5e-97 359.4 360 54.4
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 1.0e-96 358.2 404 50.7
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 6.6e-96 355.5 281 64.8
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 3.3e-95 353.2 270 66.7
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.1e-94 350.5 254 70.1
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 4.7e-94 349.4 344 54.4
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.7e-91 340.9 320 56.2
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.2e-89 334.7 338 53.6
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.6e-89 334.3 326 54.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.6e-89 334.3 261 65.5
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 6.6e-88 328.9 274 63.1
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.5e-87 327.8 401 48.1
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.6e-86 323.2 394 48.5
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 6.8e-85 318.9 247 66.8
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 7.5e-84 315.5 224 70.1
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 6.4e-83 312.4 224 69.2
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 5.0e-80 302.8 267 63.3
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 8.6e-80 302.0 233 65.2
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 6.8e-77 292.4 314 53.8
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 2.6e-76 290.4 218 68.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 7.5e-76 288.9 391 41.9
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 2.2e-75 287.3 331 48.0
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.9e-75 287.0 393 42.5
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.5e-71 274.6 386 40.4
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 1.1e-69 268.5 257 53.7
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.4e-66 257.3 264 55.7
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.1e-66 256.5 347 41.2
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 8.4e-59 232.3 301 42.2
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 9.3e-58 228.8 258 45.7
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 4.0e-53 213.4 190 59.5
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 2.2e-51 207.6 217 53.9
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 4.8e-46 189.9 271 37.3
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.8e-40 171.4 423 30.0
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.3e-39 167.2 115 71.3
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.1e-38 162.5 116 66.4
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 4.6e-33 146.7 122 62.3
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.7e-27 128.3 376 32.2
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 2.9e-27 127.5 96 60.4
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.7e-25 120.9 77 77.9
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.5e-25 120.6 100 62.0
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 4.6e-25 120.2 83 68.7
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.3e-24 118.6 84 67.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.5e-23 114.4 78 70.5
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.0e-16 90.9 117 49.6
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 2.5e-15 87.8 134 42.5
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.7e-14 84.0 84 58.3
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.2e-09 68.9 85 44.7
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 2.7e-09 67.8 77 49.4
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 1.4e-08 65.5 53 62.3
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 2.6e-07 61.2 110 39.1


User provided reference genes

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