Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 5.5e-186 654.4 406 100.0
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 4.6e-140 501.9 294 83.3
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.6e-137 493.4 295 82.0
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 5.3e-136 488.4 295 80.3
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 5.8e-135 485.0 294 80.6
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 1.9e-133 479.9 293 79.9
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.9e-133 479.9 293 79.9
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.4e-133 479.6 294 78.9
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 5.4e-133 478.4 295 78.0
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 7.1e-133 478.0 292 80.5
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.6e-132 476.9 293 79.2
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.5e-132 475.7 293 78.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 4.6e-132 475.3 294 78.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.0e-132 474.9 295 78.0
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 6.0e-132 474.9 297 78.5
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.0e-131 474.2 295 77.6
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.3e-131 473.0 295 79.0
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 2.3e-131 473.0 295 77.3
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 3.9e-131 472.2 292 79.8
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 6.7e-131 471.5 295 77.6
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 1.1e-130 470.7 295 77.3
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.1e-130 470.7 295 78.6
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.9e-130 469.9 293 77.8
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 2.5e-130 469.5 287 79.4
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 2.5e-130 469.5 317 73.8
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 3.3e-130 469.2 292 79.5
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 4.3e-130 468.8 295 76.9
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 4.3e-130 468.8 296 77.0
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 5.6e-130 468.4 294 76.2
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 5.6e-130 468.4 292 78.1
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 9.6e-130 467.6 296 77.0
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 9.6e-130 467.6 294 77.9
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 9.6e-130 467.6 294 77.9
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.3e-129 467.2 295 77.6
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.8e-129 466.1 407 61.9
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.7e-129 465.7 290 77.6
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 6.2e-129 464.9 296 76.4
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 6.2e-129 464.9 294 77.9
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.1e-128 464.2 295 75.6
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 1.1e-128 464.2 295 76.6
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 1.4e-128 463.8 295 77.3
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 2.4e-128 463.0 295 75.9
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 2.4e-128 463.0 295 75.9
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 3.1e-128 462.6 294 77.2
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 4.0e-128 462.2 286 79.0
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 6.9e-128 461.5 321 72.9
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 9.0e-128 461.1 295 76.3
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 1.2e-127 460.7 317 76.7
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 3.4e-127 459.1 297 76.8
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 5.8e-127 458.4 287 77.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 9.9e-127 457.6 296 76.0
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.7e-126 456.8 285 77.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 2.2e-126 456.4 295 74.6
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 3.8e-126 455.7 317 72.9
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 6.4e-126 454.9 344 67.4
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.1e-125 454.1 292 80.1
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 1.4e-125 453.8 295 74.6
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 9.3e-125 451.1 346 66.5
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 3.5e-124 449.1 280 76.4
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 4.6e-124 448.7 295 73.2
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.0e-124 448.4 294 75.5
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 3.0e-123 446.0 282 74.8
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 3.9e-123 445.7 324 69.8
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 2.5e-122 443.0 324 67.6
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 3.3e-122 442.6 326 68.7
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.6e-122 441.8 301 73.4
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.3e-121 440.7 267 79.4
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 1.3e-121 440.7 332 68.1
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 8.2e-121 438.0 274 77.4
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 1.8e-120 436.8 293 75.1
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 2.0e-119 433.3 281 75.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 3.4e-119 432.6 296 72.3
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 5.8e-119 431.8 296 73.6
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.0e-118 431.0 331 68.6
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 6.5e-118 428.3 339 64.0
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.4e-117 427.2 323 68.1
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 1.6e-116 423.7 294 69.4
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.8e-115 420.2 260 77.3
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 9.7e-114 414.5 330 66.7
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.2e-113 413.3 295 69.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 2.4e-112 409.8 376 56.6
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 7.7e-111 404.8 260 78.5
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 6.5e-110 401.7 295 66.8
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 7.9e-108 394.8 245 76.3
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 1.4e-107 394.0 381 57.0
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.4e-107 394.0 315 61.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.8e-107 393.7 291 66.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.3e-105 387.5 281 70.8
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.7e-105 387.1 322 62.7
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.2e-103 380.9 245 76.3
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 7.7e-103 378.3 311 62.1
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.0e-102 377.9 221 82.8
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 1.4e-101 374.0 346 58.7
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 3.2e-101 372.9 327 62.1
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.5e-98 364.0 248 72.6
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.8e-97 359.8 222 78.8
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 4.8e-97 359.0 217 81.1
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.1e-96 355.9 222 77.0
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 5.3e-96 355.5 217 79.3
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.9e-86 323.2 290 54.5
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 7.2e-85 318.5 201 77.1
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 9.4e-85 318.2 291 53.3
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 4.0e-83 312.8 326 52.1
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 4.4e-82 309.3 277 53.8
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.8e-78 296.2 251 59.8
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 7.5e-74 282.0 285 49.5
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 3.5e-71 273.1 176 76.1
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 8.3e-65 251.9 293 45.7
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 6.6e-62 242.3 182 69.2
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 9.5e-61 238.4 224 50.0
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 3.1e-51 206.8 271 41.0
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 8.3e-49 198.7 113 81.4
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 5.4e-48 196.1 114 78.9
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.2e-44 184.9 318 33.3
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.6e-42 177.2 317 39.4
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.8e-42 176.0 121 71.1
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.3e-33 148.3 101 74.3
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.7e-33 147.9 103 64.1
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.9e-30 136.7 77 84.4
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.1e-29 135.2 76 81.6
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.5e-29 134.8 91 70.3
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 1.1e-27 128.6 77 79.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.5e-23 113.6 74 74.3
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.6e-23 113.2 73 76.7
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.9e-22 110.2 84 64.3
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 5.8e-18 96.3 127 47.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 1.2e-15 88.6 109 45.0
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 2.3e-14 84.3 79 55.7
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 2.4e-11 74.3 53 67.9
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 1.0e-06 58.9 90 34.4
BolC4t26141H Brassica oleracea HOM05D035675 ORTHO05D007652 1.3e-06 58.5 60 56.7


User provided reference genes

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