Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.0e-48 194.9 102 100.0
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.0e-31 139.0 99 71.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.0e-31 139.0 99 71.7
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.7e-31 137.5 99 70.7
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 5.7e-31 137.5 99 70.7
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 7.5e-31 137.1 99 71.7
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 9.8e-31 136.7 99 71.7
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.8e-30 135.2 97 71.1
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 2.8e-30 135.2 99 69.7
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 2.8e-30 135.2 99 69.7
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 2.8e-30 135.2 99 69.7
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 2.8e-30 135.2 99 69.7
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.7e-30 134.8 100 69.0
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-30 134.4 99 70.7
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-30 134.4 99 70.7
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-30 134.4 99 70.7
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.8e-30 134.4 99 70.7
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 4.8e-30 134.4 99 70.7
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 3.1e-29 131.7 99 69.7
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 5.4e-29 131.0 97 70.1
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 69.7
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 69.7
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 67.7
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 96 70.8
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-29 131.0 99 68.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 7.0e-29 130.6 99 68.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.6e-28 129.4 93 69.9
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-28 129.4 100 66.0
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.0e-28 129.0 101 67.3
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 2.0e-28 129.0 100 68.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.0e-28 129.0 97 69.1
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 2.7e-28 128.6 99 65.7
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 3.5e-28 128.3 101 66.3
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.0e-27 126.7 99 65.7
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.3e-27 126.3 99 65.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.1e-26 123.2 97 63.9
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.1e-26 123.2 83 75.9
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.5e-26 122.9 95 67.4
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 4.2e-26 121.3 97 62.9
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.2e-25 119.8 83 72.3
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.1e-25 119.0 98 68.4
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.1e-25 119.0 98 68.4
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 2.1e-25 119.0 98 68.4
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 2.1e-25 119.0 79 74.7
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 3.6e-25 118.2 100 64.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 3.6e-25 118.2 100 64.0
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 6.1e-25 117.5 99 62.6
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.3e-24 115.5 82 70.7
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.3e-24 115.5 96 64.6
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.3e-24 115.5 96 64.6
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.3e-24 115.5 96 64.6
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 6.8e-24 114.0 80 72.5
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 8.9e-24 113.6 96 63.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 5.7e-23 110.9 98 63.3
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-22 109.0 72 76.4
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 3.7e-22 108.2 79 70.9
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.3e-22 107.5 72 73.6
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 6.3e-22 107.5 72 73.6
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.1e-21 106.7 101 58.4
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.4e-21 106.3 72 72.2
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.4e-21 105.5 81 64.2
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 4.1e-21 104.8 78 67.9
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-21 104.4 79 67.1
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-21 104.4 79 67.1
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.4e-21 104.4 79 67.1
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 7.0e-21 104.0 92 60.9
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 9.2e-21 103.6 74 70.3
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.6e-20 102.8 61 85.2
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 3.5e-20 101.7 74 73.0
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 1.3e-19 99.8 91 58.2
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.7e-19 99.4 79 65.8
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 2.9e-19 98.6 60 81.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 5.0e-19 97.8 67 76.1
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-18 95.5 87 64.4
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.6e-17 92.8 56 82.1
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 1.6e-17 92.8 55 81.8
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.6e-17 92.8 64 71.9
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 2.1e-17 92.4 56 80.4
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-17 91.7 60 75.0
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 4.7e-17 91.3 58 79.3
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.0e-16 90.1 55 81.8
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.4e-16 89.7 81 60.5
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 5.2e-16 87.8 77 61.0
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.5e-15 86.3 78 59.0
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 1.5e-15 86.3 78 59.0
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 2.6e-15 85.5 60 70.0
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 3.4e-15 85.1 54 75.9
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.4e-15 84.7 52 78.8
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 4.4e-15 84.7 52 78.8
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 4.4e-15 84.7 52 78.8
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 9.8e-15 83.6 49 85.7
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.3e-14 83.2 56 73.2
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.3e-14 83.2 52 76.9
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 1.7e-14 82.8 47 87.2
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-14 82.8 54 75.9
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-14 82.4 49 83.7
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-14 82.4 49 83.7
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-14 82.4 49 83.7
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-14 82.4 49 83.7
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-14 82.4 51 78.4
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.2e-14 82.4 51 78.4
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 2.2e-14 82.4 52 76.9
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-14 82.4 51 78.4
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-14 82.4 51 78.4
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-14 82.4 51 78.4
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.9e-14 82.0 49 83.7
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.9e-14 82.0 99 50.5
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 2.9e-14 82.0 49 83.7
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.9e-14 82.0 51 76.5
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 6.4e-14 80.9 49 81.6
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.3e-14 80.5 73 54.8
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 8.3e-14 80.5 70 61.4
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.1e-13 80.1 49 81.6
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 1.1e-13 80.1 55 74.5
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.4e-13 79.7 99 50.5
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.4e-13 79.7 62 66.1
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.4e-13 79.0 48 83.3
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.4e-13 79.0 49 81.6
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 5.4e-13 77.8 51 72.5
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 7.0e-13 77.4 50 76.0
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 1.2e-12 76.6 49 81.6
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 1.2e-12 76.6 62 61.3
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-12 76.3 67 61.2
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 3.9e-11 71.6 42 81.0
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 6.6e-11 70.9 41 82.9
SEGI_03649 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 4.3e-10 68.2 41 78.0
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.3e-10 68.2 49 75.5
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.3e-10 67.4 66 51.5
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.3e-10 67.4 99 43.4
SEGI_23567 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.2e-09 66.6 41 78.0
CARHR056710 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.1e-09 65.9 54 63.0
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.1e-09 65.9 40 80.0
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.1e-09 65.9 40 80.0
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.1e-09 65.9 40 80.0
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 2.8e-09 65.5 47 66.0
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 6.2e-09 64.3 39 79.5
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 6.2e-09 64.3 41 75.6
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 1.7e-06 56.2 48 64.6
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 6.4e-06 54.3 38 73.7
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 8.3e-06 53.9 31 80.6


User provided reference genes

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