Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 9.2e-111 404.1 287 100.0
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.9e-72 276.2 253 68.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.8e-72 275.8 250 70.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.9e-72 275.4 249 71.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.9e-71 273.5 230 73.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.2e-71 272.7 247 70.0
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.2e-71 272.7 245 71.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 7.1e-71 271.6 249 67.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 7.1e-71 271.6 253 68.0
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 9.3e-71 271.2 228 71.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 9.3e-71 271.2 228 71.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.6e-70 270.4 253 67.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.0e-70 268.5 254 65.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 6.0e-70 268.5 249 65.5
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.0e-70 268.5 230 72.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.7e-69 265.0 196 74.5
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 8.7e-69 264.6 237 70.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 4.3e-68 262.3 259 63.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 5.7e-68 261.9 228 68.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 9.7e-68 261.2 225 71.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.6e-67 260.4 244 70.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 3.7e-67 259.2 258 68.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.8e-67 258.8 264 62.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.2e-67 258.1 266 60.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 8.2e-67 258.1 209 70.8
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-66 257.3 256 62.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-66 257.3 269 66.9
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.4e-66 256.5 196 75.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 6.9e-66 255.0 244 62.3
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.9e-66 255.0 252 60.7
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.2e-65 254.2 268 74.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.2e-65 254.2 182 75.3
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.2e-65 254.2 269 66.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.5e-65 253.8 245 68.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.0e-65 253.4 245 66.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 4.5e-65 252.3 186 73.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.5e-65 252.3 230 67.8
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.0e-64 251.1 156 85.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.3e-64 250.8 273 63.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 156 82.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.7e-64 250.4 156 85.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-64 250.4 252 61.9
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.2e-64 250.0 226 63.3
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.8e-64 249.2 195 69.7
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.8e-64 249.2 244 70.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.8e-64 249.2 156 83.3
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 5.0e-64 248.8 256 64.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 8.5e-64 248.1 156 82.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 8.5e-64 248.1 224 64.3
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.5e-64 248.1 245 67.3
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.4e-63 247.3 243 68.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.9e-63 246.9 261 63.2
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.9e-63 246.9 230 72.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.9e-63 246.9 156 81.4
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.9e-63 246.9 156 81.4
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.5e-63 246.5 201 68.7
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.2e-63 245.7 229 66.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 4.2e-63 245.7 156 82.1
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.5e-63 245.4 251 64.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 7.2e-63 245.0 226 62.4
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 7.2e-63 245.0 226 62.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.2e-63 245.0 156 81.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.4e-63 244.6 233 70.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 9.4e-63 244.6 155 81.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-62 244.2 245 63.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-62 244.2 156 80.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.2e-62 244.2 227 63.9
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.6e-62 243.8 234 68.8
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.6e-62 243.8 244 69.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.6e-62 243.8 230 71.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.1e-62 243.4 248 65.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.6e-62 242.7 191 70.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.6e-62 242.7 256 63.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.6e-62 242.7 156 80.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.6e-62 242.7 233 68.7
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.6e-62 242.3 156 79.5
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 7.9e-62 241.5 226 61.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 7.9e-62 241.5 249 60.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 7.9e-62 241.5 283 62.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-61 241.1 203 68.0
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.0e-61 241.1 226 61.9
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.0e-61 241.1 226 61.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-61 240.7 191 69.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-61 240.7 155 80.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.3e-61 240.0 251 62.9
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.3e-61 240.0 251 62.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.3e-61 240.0 242 64.9
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.0e-61 239.6 156 78.8
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.9e-61 239.2 189 68.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.9e-61 239.2 265 60.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 3.9e-61 239.2 251 67.3
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 5.1e-61 238.8 204 68.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.1e-61 238.8 150 82.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.7e-61 238.4 154 80.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 8.8e-61 238.0 245 66.1
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.5e-60 237.3 191 69.1
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.5e-60 237.3 191 69.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.0e-60 236.9 153 79.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.0e-60 236.9 153 79.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.5e-60 236.5 156 78.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-60 236.1 228 62.3
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.3e-60 236.1 228 62.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.3e-60 236.1 156 78.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.3e-60 236.1 156 86.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.3e-60 235.7 256 61.3
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 7.4e-60 235.0 276 56.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 7.4e-60 235.0 157 77.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.2e-59 233.4 254 61.4
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.2e-59 233.4 156 86.5
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.2e-59 233.4 244 62.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-59 233.0 153 75.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.8e-59 233.0 234 62.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 2.8e-59 233.0 234 62.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.7e-59 232.6 157 79.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-58 230.7 252 63.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.8e-58 230.3 184 71.2
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.8e-58 230.3 156 81.4
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.1e-58 229.2 195 67.7
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.3e-58 228.8 240 61.7
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 6.9e-58 228.4 253 65.6
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 9.1e-58 228.0 156 76.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.2e-57 227.6 156 84.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.5e-57 227.3 266 59.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.0e-57 226.9 245 63.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.5e-57 225.7 220 72.3
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.0e-56 224.6 191 67.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.0e-56 224.6 196 66.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.3e-56 224.2 239 60.3
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.9e-56 223.0 196 71.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.8e-56 222.6 239 64.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 6.5e-56 221.9 149 77.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-53 213.8 147 76.2
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 4.4e-52 209.1 246 58.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 4.4e-52 209.1 246 58.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 5.3e-50 202.2 190 66.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.5e-49 199.5 141 73.8
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.1e-47 194.5 245 51.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-47 193.0 190 66.8
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 5.5e-47 192.2 204 58.3
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.6e-46 190.7 199 57.3
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 8.0e-46 188.3 125 78.4
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.3e-43 181.0 151 63.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 8.2e-43 178.3 160 65.6
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.2e-43 178.3 195 61.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.0e-40 171.4 258 55.8
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 4.7e-38 162.5 156 59.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 8.0e-38 161.8 129 67.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.0e-37 161.4 156 59.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-36 155.6 227 50.7
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.7e-35 154.1 93 83.9
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.6e-30 136.3 182 54.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-30 136.0 198 53.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-30 136.0 198 53.5
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.0e-29 132.9 198 52.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 6.8e-29 132.1 92 75.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 7.5e-28 128.6 212 47.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.8e-27 126.7 143 51.7
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.0e-18 95.5 53 84.9
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.6e-17 94.4 137 48.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.3e-16 90.5 226 41.6
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.8e-14 83.6 112 45.5
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 6.8e-13 79.0 40 95.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.8e-12 75.9 55 70.9


User provided reference genes

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