Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 3453.7 1749 100.0
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1441.8 1953 43.1
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1436.8 1957 42.6
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1428.3 1947 42.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1412.1 1961 42.2
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1409.4 1953 41.8
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1405.6 1954 42.4
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1398.6 1964 41.8
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1396.3 1951 42.8
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1395.2 1956 41.6
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1395.2 1955 41.8
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1389.8 1950 42.6
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1385.2 1952 40.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1379.8 1998 41.1
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1379.0 1961 41.7
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1377.5 1822 44.3
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1370.5 1951 41.3
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1365.5 1937 41.5
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1357.4 1952 40.7
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1354.0 1978 41.8
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1342.0 1943 40.6
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1338.9 1951 40.5
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1332.0 1926 42.4
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1328.9 1950 40.6
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1325.5 1946 40.4
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1324.3 1952 40.2
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1323.1 1950 40.7
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1318.5 1957 40.4
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1317.0 1960 40.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1316.2 1944 40.0
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1315.1 1961 40.2
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1312.7 1934 40.6
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1312.7 1947 40.1
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1312.0 1941 39.4
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1311.6 1944 40.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1310.0 1926 41.0
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1308.9 1983 39.8
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1307.4 1950 39.8
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1307.0 1985 39.8
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1304.3 1959 40.2
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1298.5 1951 40.2
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1298.1 1961 41.8
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1297.0 1824 42.0
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1295.0 1941 39.4
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1294.6 1944 39.6
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1289.2 1944 39.5
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1287.3 1958 39.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1286.2 1955 39.4
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1284.2 1952 39.0
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1281.2 1892 40.9
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1277.7 1918 40.7
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1276.9 1999 38.4
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1271.5 1947 39.2
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1270.0 1934 39.1
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1269.2 1948 39.5
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1265.4 1935 39.1
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1261.9 1948 38.9
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1253.4 2090 37.8
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1244.6 1945 39.0
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1243.8 1933 38.7
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1242.6 1947 38.9
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1237.2 1944 39.0
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1231.5 1945 38.6
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1226.5 1953 38.4
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1225.3 1935 38.6
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1220.3 1922 39.6
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1212.2 1927 38.3
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1209.5 1949 37.6
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1204.9 2072 36.8
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1203.7 1943 38.0
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1199.9 1926 38.2
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1194.5 1939 38.5
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1190.6 1979 37.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1189.5 1921 38.6
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1187.6 1927 37.8
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1185.2 1931 37.9
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1184.5 1921 38.6
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1184.1 1937 37.7
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1183.7 1943 38.4
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1172.1 1925 38.4
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1171.4 1950 37.4
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1169.5 1933 37.1
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1169.5 1926 38.3
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1168.7 1930 37.2
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1168.7 1895 39.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1168.3 1918 37.6
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1162.1 1930 37.7
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1159.8 1879 38.0
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1159.4 1938 38.1
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1157.5 1941 37.5
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1156.0 1963 36.5
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1155.6 1811 38.4
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1149.0 2430 32.7
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1116.7 1854 37.1
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1094.3 1883 37.2
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1087.4 1349 44.0
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1087.0 1911 36.9
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-296 1024.2 1227 44.9
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 4.9e-271 939.1 1721 35.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 8.9e-265 918.3 650 76.8
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 3.9e-252 876.3 2062 31.0
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 3.9e-252 876.3 1981 33.1
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 2.5e-251 873.6 2038 31.5
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 9.8e-248 861.7 1136 42.3
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 6.0e-237 825.9 896 47.8
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 4.4e-232 809.7 1421 36.7
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 2.6e-200 704.1 1902 29.5
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 2.1e-197 694.5 1101 36.8
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.3e-164 584.7 1135 34.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 2.4e-137 495.0 1725 25.7
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.4e-121 442.6 1005 31.8
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.3e-111 409.5 762 36.1
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 4.5e-59 235.0 213 46.9
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-57 230.3 174 64.9
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-50 206.8 643 27.7
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 5.0e-50 204.9 167 59.9
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.6e-48 199.9 216 42.6
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 1.8e-47 196.4 205 44.9
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 4.4e-46 191.8 326 38.7
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.8e-44 186.4 133 68.4
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.3e-29 137.1 215 32.1
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.9e-29 136.0 100 62.0
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 1.9e-28 133.3 258 33.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.5e-22 113.6 167 40.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 9.8e-22 110.9 180 38.3
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.9e-21 109.4 104 56.7
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 3.7e-21 109.0 117 48.7
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 9.5e-17 94.4 95 46.3
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 1.8e-15 90.1 82 51.2
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 3.1e-15 89.4 89 53.9
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.4e-12 79.7 62 54.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.1e-11 76.6 62 53.2
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 8.9e-07 61.2 183 26.8


User provided reference genes

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