Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1659.8 865 100.0
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1648.6 865 99.2
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1644.0 865 99.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1479.5 866 89.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1387.1 865 82.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1385.2 865 78.7
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1383.6 865 79.1
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1377.8 862 81.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1373.2 860 82.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1371.7 862 80.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1369.4 861 78.3
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1367.8 866 82.1
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1364.4 861 77.8
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1364.4 861 77.8
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1360.1 886 80.1
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1353.6 861 81.6
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1349.7 861 79.0
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1347.0 860 79.8
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1347.0 867 75.7
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1344.3 867 75.7
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1338.9 867 77.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1332.8 867 76.6
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1332.0 865 76.9
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1332.0 873 76.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1331.2 885 74.0
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1325.1 870 74.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1323.9 868 78.5
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1323.5 864 75.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1320.4 901 72.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 867 74.4
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1316.6 861 75.8
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1314.7 872 76.9
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1314.3 866 75.6
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1313.1 866 78.3
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1307.4 866 78.3
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1303.5 865 74.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1301.6 867 73.6
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 865 75.1
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1297.0 831 78.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1295.8 867 75.2
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1294.6 860 73.6
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1290.8 864 74.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1289.6 867 74.7
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1288.9 861 73.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1288.1 867 75.5
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1287.7 861 73.3
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1287.3 865 77.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1285.4 865 77.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1284.6 862 76.5
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1283.9 865 77.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1282.3 862 73.0
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1281.9 861 73.1
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 864 73.0
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 864 73.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 865 73.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1267.3 876 74.8
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1261.9 839 75.6
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1260.7 865 76.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1248.0 931 69.1
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1239.9 859 71.8
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1237.2 863 72.2
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1235.7 860 73.1
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1234.2 925 71.2
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1230.7 863 72.3
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1217.6 860 69.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1217.2 860 70.1
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1217.2 865 72.7
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 866 70.4
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1214.5 860 70.1
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1214.1 865 69.8
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1213.7 864 71.5
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1210.7 865 69.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 860 69.4
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1207.2 860 69.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1205.7 861 69.6
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 860 69.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 1011 62.9
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 860 69.5
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1202.2 860 69.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1200.7 860 69.2
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1199.1 860 69.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1190.6 952 66.1
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1189.9 907 66.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1186.4 875 68.7
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 870 67.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1170.2 862 69.3
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1170.2 860 67.8
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1164.4 751 81.2
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1143.3 943 67.9
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1142.5 897 67.0
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1140.6 873 65.1
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1135.9 790 74.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1102.0 864 63.3
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1089.3 892 64.0
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.4e-308 1062.8 793 70.9
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 7.4e-305 1050.4 696 74.9
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.1e-292 1010.0 649 76.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.2e-276 954.9 881 53.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.6e-275 951.8 625 79.2
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.3e-273 945.3 873 53.4
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.9e-269 932.2 879 54.2
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 7.3e-228 794.7 869 45.8
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.9e-224 781.9 876 52.4
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 4.4e-217 758.8 585 67.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 4.3e-212 742.3 561 67.0
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 2.5e-204 716.5 954 44.0
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.1e-203 713.4 495 72.1
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.3e-189 666.8 488 69.9
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 5.3e-186 655.6 847 45.9
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.3e-179 634.4 381 77.7
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.0e-176 624.8 480 63.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.4e-170 604.4 502 60.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 5.0e-168 595.9 446 67.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.6e-148 530.4 327 78.6
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.2e-131 474.2 613 46.0
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.2e-125 453.0 377 59.9
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 9.9e-92 342.4 217 78.3
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.8e-84 316.6 162 90.1
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 3.9e-80 303.9 387 48.8
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.2e-76 292.4 611 31.4
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 5.7e-63 246.9 636 28.5
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 9.7e-55 219.5 215 54.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.0e-37 160.2 127 59.8
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.6e-36 159.1 539 26.0
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-35 155.2 155 52.3
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 8.5e-35 153.3 634 22.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 3.0e-32 144.8 115 62.6
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.8e-32 143.7 120 58.3
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 6.3e-30 137.1 127 56.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.9e-27 128.3 115 59.1
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.9e-22 111.7 129 45.0
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.7e-17 94.4 42 95.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 6.2e-17 94.0 92 51.1
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-08 66.6 85 47.1
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.3e-08 65.5 48 60.4
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-06 59.3 56 48.2
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 6.4e-06 57.4 28 85.7


User provided reference genes

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