Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-141 506.5 246 100.0
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.8e-137 491.5 244 98.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.5e-135 485.0 246 96.3
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 5.7e-117 424.5 235 87.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.8e-116 421.4 244 82.4
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 5.9e-114 414.5 235 85.5
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.8e-99 366.3 243 72.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.9e-99 364.4 244 70.5
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.7e-97 359.8 243 69.5
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.9e-97 359.0 243 71.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.2e-96 355.1 242 73.1
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.5e-96 354.8 234 71.4
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 9.4e-96 354.0 243 69.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.2e-95 353.6 239 70.3
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.6e-95 353.2 243 67.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.1e-95 352.8 242 72.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.6e-95 352.1 243 66.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.0e-93 346.3 244 68.9
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 5.7e-93 344.7 244 67.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 7.4e-93 344.4 236 68.6
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.7e-92 343.2 244 68.4
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.2e-92 342.8 245 67.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.7e-92 342.0 244 69.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 6.3e-92 341.3 244 66.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.2e-92 340.9 243 67.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.4e-91 340.1 235 68.9
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.1e-91 337.4 236 69.5
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.0e-90 336.3 235 66.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 5.9e-90 334.7 235 67.7
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 8.5e-89 330.9 244 64.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.5e-88 330.1 245 64.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 5.5e-88 328.2 235 66.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 7.2e-88 327.8 241 61.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.4e-88 327.4 243 63.8
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.8e-86 323.2 235 65.1
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-86 322.8 236 65.7
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.3e-86 322.8 237 65.0
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.3e-86 322.8 237 65.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.7e-86 321.2 236 63.6
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 8.8e-86 320.9 236 62.7
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.0e-85 319.7 235 63.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.3e-85 318.9 233 64.4
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.4e-85 318.5 245 62.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 5.7e-85 318.2 236 61.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 9.7e-85 317.4 234 64.5
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.8e-84 315.8 246 63.8
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.7e-84 315.5 243 62.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.8e-84 315.1 239 62.3
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.2e-84 314.3 236 61.9
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.4e-83 312.8 233 63.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.1e-83 312.4 234 61.5
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 3.1e-83 312.4 243 61.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 4.1e-83 312.0 247 61.9
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.3e-83 311.6 243 60.1
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 7.0e-83 311.2 235 64.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.2e-82 310.5 243 60.5
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.6e-82 310.1 233 63.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-82 309.7 240 64.6
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.7e-82 309.3 259 61.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.7e-82 309.3 235 61.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.5e-82 308.9 234 61.1
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.0e-81 307.4 246 61.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.7e-81 306.6 240 64.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.8e-81 305.4 260 61.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.5e-81 304.7 246 60.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.5e-81 304.3 246 59.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.5e-81 304.3 246 61.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.1e-80 303.9 254 61.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.9e-80 303.1 243 63.4
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.2e-80 302.0 241 62.7
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.5e-80 301.6 235 62.1
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.2e-80 301.2 246 59.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 9.4e-80 300.8 243 60.9
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.2e-79 300.4 254 61.4
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-79 299.3 238 58.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.7e-79 298.5 238 58.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.7e-79 298.5 236 59.7
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 4.7e-79 298.5 244 61.5
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.0e-79 297.7 246 59.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-78 296.6 246 59.3
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.8e-78 296.6 244 60.7
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.0e-78 295.8 241 58.9
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.0e-78 295.8 236 63.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-78 295.4 245 60.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-78 295.4 245 60.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.8e-78 294.7 216 65.7
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 8.8e-78 294.3 246 60.6
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.6e-77 292.7 233 57.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.6e-77 292.7 237 62.0
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.6e-77 292.7 236 61.4
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.6e-77 292.7 236 61.4
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.4e-77 292.4 216 64.4
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 9.8e-77 290.8 237 60.8
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.2e-76 289.7 237 60.8
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.2e-76 289.7 237 59.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.8e-76 289.3 248 57.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.8e-76 289.3 239 56.9
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.8e-76 289.3 239 56.9
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.8e-76 288.5 235 60.0
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 8.3e-76 287.7 245 60.8
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-75 287.3 242 57.9
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.1e-75 287.3 236 60.6
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-75 287.3 237 59.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.1e-75 287.3 242 60.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.1e-75 287.3 237 59.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.4e-75 287.0 238 59.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.4e-75 287.0 237 59.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 237 57.8
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.1e-75 285.4 237 59.5
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.4e-75 285.0 237 59.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.2e-74 283.9 240 59.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-74 283.5 239 54.8
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-74 283.5 235 58.3
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.6e-74 283.5 240 58.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.5e-74 282.3 237 59.9
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.5e-74 282.3 237 59.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.5e-74 282.3 228 57.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.5e-74 282.0 240 60.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.5e-74 282.0 240 60.0
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.7e-74 281.2 234 58.5
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.0e-73 280.8 233 57.5
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.0e-73 280.8 235 59.6
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.7e-73 280.0 237 58.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-72 276.6 239 55.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.2e-72 275.4 242 56.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.6e-71 273.5 240 55.0
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.1e-71 273.1 245 53.9
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.7e-71 272.7 233 57.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.7e-71 272.7 230 57.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 8.0e-71 271.2 244 55.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-69 265.4 199 61.3
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.7e-69 265.0 216 58.3
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 5.7e-69 265.0 204 64.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 7.5e-69 264.6 221 59.3
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.7e-68 263.5 243 56.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.1e-67 258.8 238 53.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 9.2e-67 257.7 242 56.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-66 256.5 203 60.1
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 5.9e-66 255.0 209 60.3
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.7e-65 253.4 231 54.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.8e-65 252.3 238 53.8
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.2e-63 247.3 234 53.8
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.6e-63 245.7 237 51.9
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.0e-62 244.2 256 51.6
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-61 239.6 224 54.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.4e-61 239.2 223 54.7
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 3.4e-61 239.2 236 51.7
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.4e-61 238.8 170 66.5
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.2e-59 232.6 237 49.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 3.2e-59 232.6 185 58.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.3e-57 227.3 241 49.8
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.5e-53 213.8 157 65.6
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-53 213.0 163 60.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.7e-52 210.3 185 60.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 4.9e-52 208.8 244 48.0
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.1e-51 205.7 155 60.6
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 3.0e-49 199.5 163 57.1
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-48 197.6 238 44.5
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-48 197.6 259 41.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 4.4e-45 185.7 207 48.8
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.8e-45 185.3 259 39.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.9e-44 182.2 196 53.1
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 5.2e-38 162.2 127 62.2
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-35 154.5 191 42.9
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.4e-35 153.3 116 64.7
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.2e-35 152.9 93 79.6
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 9.2e-35 151.4 120 62.5
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.9e-33 146.0 101 70.3
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 8.1e-31 138.3 128 54.7
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 6.9e-30 135.2 118 55.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 8.4e-28 128.3 153 46.4
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-26 124.0 107 53.3
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 9.6e-24 114.8 166 39.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.1e-19 101.3 89 56.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.4e-19 100.9 82 52.4
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 4.2e-19 99.4 191 31.4
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 5.4e-19 99.0 70 67.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.1e-18 97.1 135 43.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.0e-17 93.2 172 34.3
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.9e-17 92.8 96 46.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.5e-16 90.9 80 56.2
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 8.4e-12 75.1 61 55.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.0e-09 68.2 170 28.2
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 2.3e-09 67.0 196 28.1


User provided reference genes

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