Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.6e-208 728.0 369 100.0
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 6.1e-200 700.7 369 96.5
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 7.5e-198 693.7 370 95.9
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 3.3e-185 651.7 369 88.3
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 7.3e-185 650.6 369 88.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.6e-182 642.1 369 87.5
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 2.4e-167 592.4 369 79.7
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.6e-163 579.7 370 78.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.7e-162 576.2 370 78.9
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 5.1e-162 574.7 370 78.4
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 6.2e-160 567.8 369 78.3
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 6.9e-159 564.3 371 76.5
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 9.0e-159 563.9 370 77.6
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.6e-158 562.4 371 76.3
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.4e-158 562.0 370 76.8
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.4e-158 562.0 371 76.8
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 9.9e-158 560.5 369 75.6
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.3e-157 560.1 371 76.0
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 2.2e-157 559.3 369 76.7
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.2e-157 559.3 370 77.0
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.9e-157 558.1 370 77.3
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.1e-156 557.0 371 75.2
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.4e-156 556.6 370 76.8
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 1.4e-156 556.6 369 76.2
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 4.2e-156 555.1 370 75.1
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 9.3e-156 553.9 372 75.8
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 2.1e-155 552.7 385 74.5
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 2.7e-155 552.4 378 74.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 4.6e-155 551.6 370 75.7
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.3e-154 550.1 373 74.8
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.3e-154 550.1 385 73.8
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.3e-154 550.1 378 73.8
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.0e-154 548.9 385 73.8
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 3.9e-154 548.5 373 74.5
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 3.9e-154 548.5 373 74.5
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 3.9e-154 548.5 370 74.9
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 5.1e-154 548.1 379 73.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 5.1e-154 548.1 377 76.4
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 6.6e-154 547.7 373 74.5
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 8.7e-154 547.4 385 73.5
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.9e-153 546.2 385 74.0
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.5e-153 545.8 373 74.5
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.3e-153 545.4 371 74.9
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 3.3e-153 545.4 373 74.0
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 7.3e-153 544.3 371 74.1
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 7.3e-153 544.3 371 74.1
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 7.3e-153 544.3 369 74.5
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 4.8e-152 541.6 371 74.9
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 8.1e-152 540.8 369 75.6
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 2.4e-151 539.3 369 75.6
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 6.9e-151 537.7 373 73.2
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 9.0e-151 537.3 375 72.3
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.2e-150 537.0 370 73.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.5e-150 535.0 375 71.7
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 4.5e-150 535.0 379 71.8
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.8e-150 534.6 371 74.9
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.7e-149 533.1 371 73.3
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.8e-149 531.9 371 73.3
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 4.9e-149 531.6 372 73.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 8.4e-149 530.8 376 72.3
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.1e-148 530.4 371 73.9
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.9e-148 529.6 385 71.2
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.2e-148 528.9 385 72.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.2e-148 528.9 371 72.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 3.2e-148 528.9 379 70.7
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 3.2e-148 528.9 385 71.2
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 9.3e-148 527.3 366 73.0
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 9.3e-148 527.3 385 70.9
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.3e-146 522.7 369 72.9
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 5.1e-146 521.5 402 69.4
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.5e-145 520.0 372 71.2
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 3.3e-145 518.8 371 69.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 9.6e-145 517.3 369 71.0
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.7e-144 515.4 365 71.8
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.1e-144 514.2 371 71.4
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.4e-143 512.7 376 70.2
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 4.0e-143 511.9 374 70.3
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.2e-141 506.1 371 71.2
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.4e-140 503.4 371 69.0
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-139 500.4 388 66.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-139 500.4 387 66.9
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.3e-138 496.9 370 68.1
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.9e-138 495.4 376 68.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 6.7e-138 494.6 372 68.3
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 6.7e-138 494.6 373 68.4
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 8.7e-138 494.2 372 68.5
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-137 493.8 371 68.2
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-137 493.8 372 66.7
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.9e-137 493.0 374 68.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 2.5e-137 492.7 371 67.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 3.3e-137 492.3 374 67.1
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 3.7e-136 488.8 317 78.5
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 6.2e-136 488.0 370 66.8
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 6.2e-136 488.0 370 67.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.1e-135 487.3 370 67.6
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.4e-135 486.1 369 69.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 6.9e-135 484.6 362 68.5
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.6e-134 482.6 372 66.1
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.0e-133 480.7 371 65.2
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.3e-133 480.3 371 67.1
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.9e-133 479.2 371 65.8
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.8e-133 478.8 322 73.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.4e-132 476.9 372 66.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 2.7e-131 472.6 372 65.9
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 7.9e-131 471.1 365 66.3
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 3.0e-130 469.2 371 63.9
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 4.8e-128 461.8 371 65.2
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 4.1e-127 458.8 372 67.2
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 5.3e-127 458.4 384 62.2
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.0e-126 456.4 357 68.6
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.2e-125 453.0 371 61.7
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 5.0e-125 451.8 370 61.4
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-120 436.0 349 63.9
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 4.8e-120 435.3 386 57.0
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.2e-120 434.5 325 70.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.1e-119 434.1 302 75.5
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.6e-118 429.5 363 63.4
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.5e-117 424.5 322 67.4
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 9.7e-113 411.0 367 58.9
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.8e-103 380.2 280 68.6
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 7.0e-103 378.3 367 54.8
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.5e-102 375.6 301 64.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.6e-99 367.1 314 60.2
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.8e-80 303.1 189 84.1
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 2.0e-70 270.4 382 40.6
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.9e-69 266.2 150 90.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.1e-68 264.6 275 50.2
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.3e-68 263.1 258 56.2
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.3e-68 262.7 161 80.1
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-61 241.1 327 47.1
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 5.1e-61 239.2 242 55.8
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 3.4e-57 226.5 332 38.9
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.2e-55 219.9 150 75.3
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-51 207.6 174 64.4
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 2.4e-50 203.8 181 54.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.6e-49 200.3 182 61.0
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.0e-45 188.3 228 46.5
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 4.4e-41 172.9 160 54.4
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 7.3e-36 155.6 133 63.9
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.6e-35 154.5 133 63.2
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 8.4e-32 142.1 81 88.9
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 8.4e-32 142.1 121 64.5
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.1e-30 137.5 96 68.8
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 7.6e-25 119.0 122 55.7
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.2e-23 113.6 84 69.0
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-17 95.1 185 38.4
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.0e-16 89.7 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.0e-16 89.7 51 84.3
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.4e-15 88.2 104 50.0


User provided reference genes

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