Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.2e-63 245.4 117 100.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.6e-53 211.5 116 86.2
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.4e-52 209.5 116 84.5
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.4e-52 209.5 116 84.5
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.4e-52 209.5 116 84.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.4e-49 198.7 116 81.9
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.0e-47 193.4 115 77.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.0e-47 193.4 115 77.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.3e-47 193.0 116 76.7
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.2e-46 188.3 115 78.3
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.2e-46 188.3 115 75.7
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 9.4e-46 186.8 116 75.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.1e-45 184.1 117 75.2
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-44 181.4 116 74.1
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-44 181.4 116 74.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.6e-43 178.7 115 73.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 7.5e-43 177.2 124 71.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.8e-39 164.9 116 69.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.9e-38 162.5 116 66.4
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.2e-38 160.6 116 66.4
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.6e-37 159.5 116 66.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.1e-37 159.1 116 66.4
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 3.6e-37 158.3 116 63.8
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 4.7e-37 157.9 116 66.4
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.4e-36 156.4 116 66.4
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.8e-36 156.0 116 65.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.8e-36 156.0 116 66.4
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.8e-36 156.0 116 64.7
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.0e-36 154.8 115 66.1
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.2e-36 154.5 116 64.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-35 153.3 116 64.7
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.2e-35 153.3 116 65.5
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.4e-35 151.4 116 64.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.7e-35 151.0 116 63.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 9.8e-35 150.2 116 62.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 9.8e-35 150.2 116 62.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.3e-34 149.8 116 62.1
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.3e-34 149.8 116 62.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.7e-34 149.4 116 62.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.2e-34 149.1 116 62.1
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.9e-34 147.9 116 64.7
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.9e-34 147.9 116 63.8
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 6.3e-34 147.5 116 60.3
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.1e-33 146.7 116 60.3
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.4e-33 146.4 116 61.2
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.8e-33 146.0 116 63.8
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.8e-33 146.0 116 63.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.4e-33 145.6 116 62.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 3.1e-33 145.2 116 62.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.1e-33 145.2 115 61.7
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.1e-33 145.2 116 63.8
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.1e-33 145.2 116 60.3
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.4e-33 144.4 105 65.7
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 7.0e-33 144.1 116 61.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.2e-33 143.7 105 64.8
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-32 143.3 118 62.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.2e-32 143.3 116 61.2
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.6e-32 142.9 116 61.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-32 142.9 116 59.5
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.0e-32 142.5 114 62.3
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.7e-32 142.1 129 60.5
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.7e-32 142.1 117 60.7
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 4.5e-32 141.4 116 59.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 5.9e-32 141.0 120 59.2
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 5.9e-32 141.0 116 57.8
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.8e-32 140.6 116 57.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.0e-31 140.2 130 56.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-31 139.8 118 60.2
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.7e-31 139.4 119 57.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.7e-31 139.4 116 56.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.7e-31 139.4 116 59.5
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.7e-31 139.4 116 58.6
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.3e-31 139.0 116 56.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-31 139.0 114 60.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.3e-31 139.0 117 60.7
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.3e-31 139.0 117 60.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.9e-31 138.7 115 61.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.8e-31 138.3 116 58.6
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.1e-30 136.7 116 56.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-30 136.7 116 55.2
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-30 136.7 116 58.6
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.5e-30 136.3 116 58.6
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.5e-30 136.3 116 56.9
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.5e-30 135.6 102 63.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.3e-30 135.2 116 57.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.3e-30 135.2 116 58.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.3e-30 134.8 116 56.0
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.6e-30 134.4 119 58.8
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 5.6e-30 134.4 118 58.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.6e-30 134.4 118 57.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.6e-30 134.4 116 55.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.6e-30 134.4 116 55.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 5.6e-30 134.4 118 56.8
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.3e-30 134.0 118 57.6
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 7.3e-30 134.0 118 57.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.3e-30 134.0 116 55.2
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.2e-29 133.3 116 58.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.6e-29 132.9 118 56.8
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.6e-29 132.9 119 58.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-29 132.1 116 54.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.6e-29 131.7 116 59.5
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.6e-29 131.7 116 57.8
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 4.7e-29 131.3 118 57.6
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.1e-29 131.0 118 55.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.1e-29 131.0 116 57.8
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 8.0e-29 130.6 120 60.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.0e-29 130.6 119 56.3
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.0e-29 130.6 116 53.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-28 129.4 120 53.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-28 129.4 116 54.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.3e-28 129.0 118 55.9
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.3e-28 129.0 118 55.1
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.3e-28 129.0 118 55.1
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.3e-28 129.0 101 63.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.0e-28 128.6 118 56.8
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-28 128.6 120 53.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.8e-28 127.5 116 53.4
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 8.9e-28 127.1 118 56.8
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.2e-27 126.7 94 64.9
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-27 125.9 118 55.9
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.0e-27 125.9 118 55.9
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.0e-27 125.9 116 56.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.0e-27 125.9 117 51.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.6e-27 125.6 116 52.6
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.4e-27 125.2 119 51.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.4e-27 124.8 118 53.4
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.8e-27 124.4 116 55.2
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.8e-27 124.4 118 55.9
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-26 122.9 107 57.0
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.9e-26 122.1 116 53.4
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.7e-26 121.7 116 52.6
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 4.9e-26 121.3 115 53.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-25 120.2 116 54.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.4e-25 119.0 116 50.9
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-25 119.0 116 51.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-25 119.0 116 51.7
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.2e-25 118.6 118 55.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 4.1e-25 118.2 116 49.1
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.4e-25 117.9 116 51.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.4e-25 117.9 116 50.9
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-24 116.7 108 51.9
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.7e-24 115.5 116 51.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.7e-24 115.5 116 51.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-24 115.5 97 56.7
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.6e-24 114.8 107 53.3
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.6e-24 114.8 112 53.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.6e-24 114.8 120 50.8
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.0e-24 114.4 97 55.7
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.0e-23 113.6 116 50.9
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.3e-23 113.2 107 56.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.9e-23 111.7 117 48.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 6.6e-23 110.9 116 54.3
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.1e-22 110.2 91 60.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 9.5e-22 107.1 116 49.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.8e-20 102.8 117 47.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 2.3e-20 102.4 67 71.6
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.0e-19 99.4 118 42.4
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.6e-19 99.0 111 49.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.9e-17 92.8 118 39.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.4e-17 92.4 72 62.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.4e-17 92.4 66 68.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.4e-17 92.4 115 47.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.4e-17 91.3 93 54.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 9.2e-17 90.5 113 45.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.3e-15 86.7 118 43.2
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 5.1e-15 84.7 116 42.2
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.8e-13 79.0 133 33.1
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 4.7e-13 78.2 91 44.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.5e-11 73.2 55 56.4
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-10 69.3 120 36.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.9e-10 68.9 53 56.6
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 4.9e-10 68.2 51 58.8
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.3e-10 67.4 121 36.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-07 60.1 53 49.1


User provided reference genes

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