Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1702.6 864 100.0
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1591.6 864 92.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1583.5 864 91.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1494.2 865 85.4
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1487.6 866 86.0
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1479.9 865 85.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1471.4 866 84.8
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1449.9 866 84.8
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1446.8 866 83.7
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1446.0 866 84.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1440.2 840 86.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1350.9 865 76.3
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1347.4 867 77.2
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1342.8 862 78.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1330.5 866 76.7
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1327.0 865 76.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1320.8 862 74.7
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 861 75.6
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1318.1 866 76.1
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1318.1 863 76.5
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 861 74.2
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1315.8 862 74.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1315.8 862 74.4
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1315.4 866 75.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1312.7 865 76.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 860 76.0
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1311.6 866 75.6
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1309.3 861 75.1
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1305.0 865 74.9
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 862 74.1
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1302.7 886 73.8
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 862 74.8
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 861 74.2
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1299.6 862 74.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1293.9 874 73.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1290.0 865 73.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1289.2 862 72.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1288.5 879 72.7
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1286.2 862 73.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1280.8 867 73.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1277.3 861 74.0
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1276.2 895 71.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1275.8 861 73.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1265.4 864 72.9
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1263.8 861 71.2
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1261.5 867 72.1
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1259.6 863 71.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1256.9 861 71.3
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1255.7 863 71.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1255.4 860 72.2
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1254.6 830 74.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1253.0 867 71.5
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1244.2 862 70.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1241.5 863 69.8
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 862 69.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1236.9 866 71.1
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 927 65.9
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1223.4 860 70.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1221.5 861 70.6
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1214.1 863 69.1
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 861 69.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 878 68.3
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1201.0 861 68.9
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1201.0 859 69.4
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1199.1 862 68.6
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1194.5 916 66.0
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1191.8 862 68.0
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1191.4 1005 61.2
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 0.0e+00 1190.6 795 78.0
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1181.4 864 67.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1179.9 862 67.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1177.5 861 69.1
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 865 66.5
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 865 66.7
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1173.3 863 68.6
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1167.1 865 66.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1166.8 946 63.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1165.6 864 66.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 865 66.4
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1163.7 865 66.2
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1162.5 862 66.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1162.1 865 66.2
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1157.5 864 66.1
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1155.6 872 66.3
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1150.2 860 67.8
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1144.4 911 63.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1143.3 870 65.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1142.1 870 64.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1136.7 864 65.3
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1120.1 790 71.4
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1113.6 892 64.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1091.6 864 61.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-310 1069.7 942 61.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 5.5e-308 1060.8 888 61.6
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.0e-302 1042.3 693 73.4
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.8e-298 1029.2 749 70.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 2.3e-282 975.7 646 75.2
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.0e-266 922.2 879 51.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.7e-264 916.4 872 52.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.2e-264 916.0 876 51.8
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.8e-264 915.6 624 73.7
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 4.1e-231 805.4 870 45.5
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.4e-225 785.8 876 50.7
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.4e-225 785.8 445 89.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.1e-210 737.6 584 65.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.8e-208 729.2 559 66.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-205 720.7 495 73.1
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.7e-203 712.6 956 41.4
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.2e-183 645.2 485 66.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 5.1e-181 639.0 849 44.2
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 6.9e-178 628.6 500 62.2
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.2e-176 623.6 381 77.2
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 9.4e-175 618.2 481 61.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.2e-143 513.1 327 75.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.3e-131 474.9 614 45.9
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.0e-130 469.2 378 63.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.4e-92 344.0 236 70.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 3.8e-83 313.9 386 50.0
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 9.3e-82 309.3 162 87.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 9.3e-74 282.7 682 28.9
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.8e-59 234.2 649 28.2
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 4.5e-44 184.1 155 59.4
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.0e-43 183.0 155 61.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.3e-35 156.0 126 61.1
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.0e-32 144.8 127 56.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.8e-30 138.3 361 29.1
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.0e-28 132.1 84 67.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.9e-28 130.6 94 63.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.8e-24 117.1 399 25.1
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.5e-20 104.8 94 56.4
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.3e-18 97.8 136 41.9
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 8.0e-17 93.6 42 95.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 4.1e-13 81.3 91 41.8
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 9.5e-10 70.1 46 69.6
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.7e-06 59.3 62 50.0
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-06 59.3 58 44.8


User provided reference genes

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