Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 7.5e-195 683.7 359 100.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 3.2e-185 651.7 359 96.4
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.6e-181 639.4 359 87.5
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.8e-178 628.2 359 86.1
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 5.3e-172 607.8 360 83.6
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 4.9e-170 601.3 361 82.0
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 3.2e-169 598.6 362 82.3
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.2e-169 598.6 360 81.4
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 5.4e-169 597.8 362 81.8
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 9.3e-169 597.0 360 83.9
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.3e-167 593.2 360 83.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 6.7e-167 590.9 362 81.8
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.5e-166 589.0 360 80.6
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.3e-166 588.6 360 80.3
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.3e-165 586.6 360 79.4
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.1e-140 502.3 359 68.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 5.3e-140 501.5 359 68.2
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 8.5e-138 494.2 359 67.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.1e-137 493.8 359 68.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.4e-137 493.4 374 67.4
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.2e-137 491.9 359 67.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 5.5e-137 491.5 369 66.4
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.5e-137 491.5 374 66.8
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 7.2e-137 491.1 359 69.1
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 7.2e-137 491.1 371 67.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 9.4e-137 490.7 359 68.2
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 9.4e-137 490.7 371 67.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 9.4e-137 490.7 359 69.1
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.1e-136 489.6 360 67.8
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.6e-136 488.8 360 68.1
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.6e-136 488.8 374 69.3
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 7.9e-136 487.6 371 67.4
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.4e-135 486.9 374 66.8
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.3e-135 486.1 363 68.0
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.3e-135 486.1 371 67.1
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 3.0e-135 485.7 359 67.1
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 3.0e-135 485.7 380 65.0
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 3.0e-135 485.7 359 66.9
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 3.0e-135 485.7 374 70.6
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 5.1e-135 485.0 360 67.8
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.1e-134 483.8 359 66.9
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.1e-134 483.8 362 67.1
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 2.0e-134 483.0 374 70.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 2.6e-134 482.6 372 67.2
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 3.3e-134 482.3 360 67.2
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.3e-133 480.3 366 66.1
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.3e-133 480.3 360 66.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.8e-133 479.2 375 64.8
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.7e-133 478.8 361 66.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 4.8e-133 478.4 359 67.1
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 6.3e-133 478.0 366 65.8
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 8.2e-133 477.6 364 67.9
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.1e-132 475.7 362 66.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 4.1e-132 475.3 367 65.4
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 5.3e-132 474.9 380 63.4
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 7.0e-132 474.6 368 65.2
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 9.1e-132 474.2 360 66.4
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.2e-131 473.8 363 64.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 1.5e-131 473.4 359 64.3
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.0e-131 473.0 302 77.2
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.7e-130 469.9 377 63.4
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 1.7e-130 469.9 362 65.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.2e-130 469.5 368 64.9
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.9e-130 469.2 375 63.5
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.8e-130 468.8 365 64.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 64.3
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 64.6
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 64.3
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.4e-129 466.8 362 65.2
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.4e-129 466.8 367 65.4
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.4e-129 466.8 367 64.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-129 466.8 365 64.4
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.4e-129 466.8 365 64.4
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.4e-129 466.8 365 63.8
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 1.4e-129 466.8 378 63.5
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.9e-129 466.5 367 64.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.9e-129 466.5 364 65.7
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 5.5e-129 464.9 373 62.2
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.5e-129 464.9 361 65.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 7.2e-129 464.5 360 64.7
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.2e-128 463.8 367 63.5
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 2.1e-128 463.0 372 62.1
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 2.1e-128 463.0 374 63.9
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 6.1e-128 461.5 372 61.3
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.0e-127 460.7 365 63.8
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.0e-127 460.7 372 61.3
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 1.8e-127 459.9 363 64.5
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.8e-127 459.9 363 65.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 5.2e-127 458.4 363 64.2
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.8e-127 457.6 377 62.3
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 8.8e-127 457.6 369 63.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.0e-126 456.4 361 64.8
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.8e-125 452.6 361 64.0
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.3e-125 451.4 383 61.6
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.3e-125 451.4 392 64.3
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.4e-124 450.3 359 63.8
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 4.1e-124 448.7 383 59.8
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.0e-124 448.0 366 63.1
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 9.1e-124 447.6 383 59.5
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.8e-122 442.2 346 63.9
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.5e-121 439.5 359 62.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 8.8e-119 431.0 366 59.0
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.3e-118 429.1 354 61.9
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 3.3e-118 429.1 366 59.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 4.4e-118 428.7 359 60.7
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 4.5e-115 418.7 361 59.3
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.9e-114 416.0 303 68.6
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 5.0e-114 415.2 379 56.5
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.0e-111 406.0 313 63.9
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.4e-108 397.1 362 58.8
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.1e-108 396.0 355 56.3
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 5.4e-108 395.2 346 60.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.4e-103 380.6 352 56.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 5.7e-102 375.2 343 56.0
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 4.1e-100 369.0 387 48.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.6e-99 367.1 277 68.6
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.9e-99 365.2 313 60.4
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.5e-97 360.5 361 54.3
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-96 357.5 313 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.5e-94 350.5 357 51.3
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.6e-91 339.0 371 50.7
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 5.6e-89 332.0 294 58.8
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.5e-83 312.8 273 57.1
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.9e-78 294.7 189 79.4
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.2e-68 262.7 160 81.2
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.7e-67 260.0 162 82.1
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 4.8e-64 249.2 257 49.8
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.1e-60 238.0 364 39.8
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-57 228.0 259 48.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 3.0e-50 203.4 181 54.1
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.5e-49 201.1 205 50.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.8e-48 196.8 210 50.5
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.2e-48 195.7 159 62.3
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 6.9e-47 192.2 323 38.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.4e-44 184.5 197 49.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.9e-43 178.7 197 49.2
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.9e-36 157.5 133 65.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 4.2e-36 156.4 133 64.7
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.4e-31 140.6 121 62.0
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.1e-31 140.2 229 33.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 2.6e-30 137.1 81 84.0
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 7.9e-27 125.6 158 41.8
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.3e-23 112.8 84 67.9
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 5.7e-17 92.8 93 43.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.3e-16 91.7 112 43.8
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.4e-15 87.4 51 78.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.4e-15 87.4 51 78.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 3.2e-12 77.0 146 35.6
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.1e-09 68.6 79 46.8


User provided reference genes

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