Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.1e-95 352.1 282 100.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.8e-88 329.3 189 90.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.8e-87 326.6 172 98.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.5e-86 322.4 189 88.9
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 8.8e-82 307.8 172 93.0
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 8.8e-82 307.8 172 93.0
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.6e-81 306.2 188 85.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.6e-81 306.2 189 83.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.4e-79 299.7 172 91.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.1e-79 298.9 172 91.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 4.1e-79 298.9 172 90.7
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 6.6e-77 291.6 283 89.8
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.6e-77 291.6 172 90.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.5e-76 289.7 167 88.6
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.3e-76 289.3 172 86.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 3.3e-76 289.3 176 85.8
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 9.5e-76 287.7 177 86.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.8e-75 286.2 172 86.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 4.0e-74 282.3 173 87.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 6.8e-74 281.6 165 88.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 6.8e-74 281.6 167 88.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.0e-73 280.0 174 85.6
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.6e-73 279.6 172 86.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 3.4e-73 279.3 177 83.6
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.7e-72 276.9 180 82.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.9e-72 276.2 174 85.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 2.9e-72 276.2 191 77.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-71 273.5 174 83.9
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.4e-71 273.1 174 83.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 3.2e-71 272.7 165 87.3
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.4e-71 271.9 165 86.1
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.4e-71 271.9 170 85.3
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 9.2e-71 271.2 162 85.8
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-70 270.8 179 81.6
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 2.0e-70 270.0 172 83.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.7e-70 269.6 175 81.7
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.6e-70 268.9 181 79.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.6e-70 268.9 164 87.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.6e-70 268.9 176 82.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 5.9e-70 268.5 177 80.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 7.8e-70 268.1 174 80.5
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 7.8e-70 268.1 156 89.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-69 267.7 177 80.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.0e-69 267.7 174 82.2
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-69 267.3 169 85.2
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.3e-69 267.3 172 82.6
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.7e-69 266.9 165 84.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.7e-69 266.9 172 81.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.3e-69 266.5 156 87.2
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.3e-69 266.5 156 87.8
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.3e-69 266.5 176 81.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.3e-69 266.5 153 88.9
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.9e-69 266.2 156 87.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.9e-69 266.2 156 87.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.9e-69 265.8 180 79.4
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.9e-69 265.8 172 80.8
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.9e-69 265.8 174 81.0
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-69 265.8 164 85.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-69 265.8 164 85.4
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 3.9e-69 265.8 175 80.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.0e-69 265.4 156 87.8
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 8.6e-69 264.6 179 80.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.6e-69 264.6 161 87.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.6e-69 264.6 175 79.4
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 84.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 84.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 84.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 167 81.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-68 263.5 163 84.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.9e-68 263.5 163 84.0
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.9e-68 263.5 157 87.3
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.5e-68 263.1 153 88.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.3e-68 262.7 172 81.4
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.3e-68 262.3 175 78.9
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-68 262.3 159 84.9
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 4.3e-68 262.3 159 84.9
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.3e-68 262.3 179 79.3
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.6e-68 261.9 153 87.6
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.6e-68 261.9 177 80.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 7.3e-68 261.5 172 80.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 9.5e-68 261.2 163 83.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.5e-68 261.2 178 79.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 163 81.0
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 163 81.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.6e-67 260.4 189 76.2
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.6e-67 260.4 179 78.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.1e-67 260.0 175 79.4
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.1e-67 260.0 199 73.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.8e-67 259.6 176 80.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 4.7e-67 258.8 177 79.7
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 6.2e-67 258.5 173 79.8
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.0e-66 257.7 171 78.9
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.0e-66 257.7 189 75.7
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.8e-66 256.9 150 88.0
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-66 256.9 172 79.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-66 256.9 178 77.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.3e-66 256.5 166 80.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.1e-66 256.1 167 80.2
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.0e-66 255.8 177 78.5
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.8e-66 255.0 172 77.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.2e-65 254.2 172 77.3
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.5e-65 253.8 147 89.1
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.6e-65 253.1 172 79.7
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 2.6e-65 253.1 181 76.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.7e-64 250.4 193 72.0
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.2e-64 250.0 161 81.4
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 2.2e-64 250.0 161 81.4
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.9e-64 249.6 172 77.3
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 8.3e-64 248.1 151 83.4
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.3e-64 248.1 160 81.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.2e-63 246.1 172 77.3
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-63 246.1 172 77.3
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.1e-63 245.7 172 76.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.1e-63 245.7 172 76.7
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.4e-63 245.4 182 73.1
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 5.4e-63 245.4 165 80.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.7e-62 243.0 156 82.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.5e-62 242.7 153 81.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.5e-62 242.7 153 81.7
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.8e-62 241.5 153 81.0
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-61 240.7 153 82.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.0e-61 239.6 157 80.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-61 238.4 168 75.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-59 234.2 143 83.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.7e-59 232.3 158 79.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 4.7e-59 232.3 170 75.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 8.1e-59 231.5 156 79.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.4e-58 230.7 149 81.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.3e-58 229.9 146 80.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.6e-57 226.5 144 81.9
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.4e-57 226.1 181 70.2
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 9.8e-57 224.6 160 78.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 4.9e-56 222.2 193 65.8
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 7.1e-55 218.4 172 69.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 7.1e-55 218.4 172 69.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 6.0e-54 215.3 138 81.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 5.6e-52 208.8 174 67.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 8.1e-51 204.9 125 84.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.5e-49 200.7 138 76.1
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-47 193.0 140 75.0
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-47 193.0 180 62.2
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 9.2e-47 191.4 133 75.9
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.2e-47 191.4 174 64.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 4.6e-46 189.1 160 63.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.5e-44 184.1 188 62.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.6e-43 180.6 181 60.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.1e-43 178.3 153 64.1
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-42 177.2 173 60.7
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-41 174.1 126 73.8
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.5e-36 156.8 94 83.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 9.6e-36 154.8 173 59.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 9.9e-33 144.8 111 71.2
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-31 140.2 174 50.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-31 140.2 174 50.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.2e-31 139.4 174 50.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.3e-31 138.3 174 50.0
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 4.8e-27 125.9 140 51.4
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-20 104.0 144 47.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-18 98.2 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-14 82.0 40 100.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-12 77.4 54 70.4
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.3e-12 76.6 82 57.3
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.7e-12 75.9 45 80.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 2.2e-08 63.9 67 55.2


User provided reference genes

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