Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.2e-222 776.2 400 100.0
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.2e-174 615.9 400 81.8
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 6.9e-173 610.9 401 81.8
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 8.8e-160 567.4 380 78.2
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 6.3e-158 561.2 343 84.8
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 8.5e-155 550.8 435 68.7
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 1.4e-152 543.5 329 83.6
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.9e-146 523.1 304 85.2
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 2.6e-143 512.7 296 86.1
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 2.6e-143 512.7 296 86.1
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 5.9e-140 501.5 298 81.9
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 8.5e-139 497.7 411 66.4
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.5e-138 496.9 349 72.2
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.2e-138 495.7 298 80.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.7e-137 492.7 297 79.8
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 4.7e-137 491.9 338 72.8
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 3.0e-136 489.2 410 63.9
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 1.5e-135 486.9 334 74.3
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 3.4e-135 485.7 408 64.7
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 1.1e-133 480.7 408 64.5
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 5.4e-133 478.4 340 71.5
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 2.0e-132 476.5 298 77.9
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 3.5e-132 475.7 407 63.9
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 4.5e-132 475.3 388 66.5
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.0e-131 474.2 297 76.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.1e-130 470.7 368 66.3
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 9.5e-130 467.6 344 70.1
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.2e-129 467.2 303 75.2
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.2e-129 467.2 299 76.9
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.2e-129 467.2 302 74.2
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.1e-129 466.5 303 76.2
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 2.1e-129 466.5 393 62.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.8e-129 466.1 419 61.3
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 6.1e-129 464.9 382 65.4
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 8.0e-129 464.5 299 76.3
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.4e-128 463.8 343 69.4
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.4e-128 463.8 297 75.4
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 4.0e-128 462.2 344 68.9
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 5.2e-128 461.8 307 73.9
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 5.2e-128 461.8 297 75.4
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.9e-128 461.1 420 60.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 1.2e-127 460.7 280 79.3
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.5e-127 460.3 327 70.3
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.6e-127 459.5 360 67.5
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 4.4e-127 458.8 336 70.2
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 4.4e-127 458.8 336 70.2
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.4e-127 458.8 295 75.9
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 4.4e-127 458.8 409 61.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 5.7e-127 458.4 345 67.2
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 9.8e-127 457.6 453 58.7
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 9.8e-127 457.6 295 74.6
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.2e-126 456.4 327 69.7
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 8.3e-126 454.5 400 62.2
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.4e-125 453.0 291 76.3
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 7.0e-125 451.4 267 80.1
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 7.0e-125 451.4 321 70.1
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 2.7e-124 449.5 370 63.2
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.9e-124 448.4 353 66.9
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.0e-123 447.6 373 65.7
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.3e-123 446.4 407 61.2
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.0e-123 446.0 395 64.1
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 5.0e-123 445.3 369 63.1
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 5.0e-123 445.3 407 60.2
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 6.6e-123 444.9 350 66.3
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 4.3e-122 442.2 418 61.5
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 7.3e-122 441.4 384 61.5
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.8e-120 436.8 433 58.9
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 9.8e-119 431.0 260 79.2
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 1.7e-118 430.3 408 55.6
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 3.7e-118 429.1 331 66.5
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 2.4e-117 426.4 372 59.7
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 3.2e-117 426.0 436 55.7
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.3e-115 420.6 363 61.2
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 3.9e-115 419.1 453 53.6
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.9e-114 416.8 414 58.2
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 7.3e-114 414.8 310 67.4
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 2.1e-113 413.3 260 76.2
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 3.1e-112 409.5 260 78.5
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 3.4e-111 406.0 495 50.1
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 7.5e-111 404.8 245 79.6
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 8.3e-110 401.4 330 64.5
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 3.2e-109 399.4 488 49.2
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 2.1e-108 396.7 341 61.0
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 7.8e-108 394.8 405 54.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.1e-107 392.1 401 55.1
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 7.3e-106 388.3 331 61.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 2.1e-105 386.7 281 70.8
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 2.3e-104 383.3 290 69.3
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 5.2e-104 382.1 322 62.4
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 4.6e-100 369.0 388 54.6
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 6.6e-99 365.2 336 58.3
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.5e-98 363.2 222 78.8
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.6e-97 360.5 378 55.6
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.6e-97 360.5 221 79.6
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 2.1e-97 360.1 435 49.9
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.4e-96 357.5 313 61.7
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.8e-96 357.1 267 70.8
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.8e-96 357.1 222 78.4
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 7.1e-93 345.1 216 77.8
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.4e-87 325.9 410 45.9
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.4e-86 322.0 307 60.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.2e-84 317.8 329 52.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.6e-84 315.8 353 48.4
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.9e-83 312.8 251 62.2
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 9.3e-77 291.6 378 42.9
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.3e-74 282.7 355 43.9
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 1.0e-70 271.6 188 73.4
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.2e-68 264.6 183 74.3
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 8.7e-67 258.5 294 46.3
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 3.8e-62 243.0 246 47.2
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.9e-53 214.2 271 41.0
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.4e-51 208.0 386 40.9
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 9.7e-50 201.8 113 85.0
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.6e-47 193.7 392 32.1
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.6e-47 193.7 114 78.9
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.2e-45 186.8 121 73.6
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 2.0e-34 151.0 103 67.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.2e-33 147.5 101 74.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.2e-30 137.5 77 83.1
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 5.5e-29 132.9 89 68.5
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 7.2e-29 132.5 76 81.6
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 6.8e-27 125.9 77 74.0
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.7e-25 120.2 121 59.5
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.4e-24 116.3 82 70.7
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.3e-22 111.7 102 57.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 1.4e-19 101.7 140 46.4
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 4.9e-17 93.2 99 51.5
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 1.8e-16 91.3 79 58.2
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 2.3e-11 74.3 54 61.1
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 1.0e-06 58.9 88 36.4
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 1.7e-06 58.2 322 27.0


User provided reference genes

Program Settings