Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.0e-85 320.9 283 100.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.6e-78 295.4 283 89.8
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.9e-77 292.4 152 98.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.9e-76 290.0 283 78.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.6e-75 285.8 281 78.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.2e-73 280.8 152 95.4
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-73 280.0 152 94.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-73 280.0 152 94.7
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.6e-73 279.6 282 75.9
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.4e-73 279.3 152 94.1
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 7.5e-73 278.1 232 77.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 9.8e-73 277.7 152 94.1
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 152 92.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.6e-70 270.4 152 91.4
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 4.6e-70 268.9 152 90.1
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 6.0e-70 268.5 153 91.5
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 7.8e-70 268.1 152 90.8
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 7.8e-70 268.1 152 90.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 7.8e-70 268.1 152 91.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.0e-69 267.7 152 90.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.0e-69 267.7 152 91.4
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.3e-69 266.5 152 89.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.3e-69 266.5 152 91.4
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.3e-69 266.5 152 89.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.3e-69 266.5 152 89.5
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 91.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 91.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 91.4
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 88.8
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 88.8
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 91.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.6e-69 265.0 152 88.8
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 8.6e-69 264.6 152 88.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.1e-68 264.2 152 88.2
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.5e-68 263.8 152 90.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.5e-68 263.8 153 90.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 152 90.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.9e-68 263.5 152 90.1
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.9e-68 263.5 152 90.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.9e-68 263.5 152 90.1
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.9e-68 263.5 152 90.1
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.5e-68 263.1 153 90.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.5e-68 263.1 153 90.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.5e-68 263.1 152 89.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-68 262.3 152 88.8
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 4.3e-68 262.3 152 88.8
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 4.3e-68 262.3 152 88.8
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.3e-68 262.3 152 89.5
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.3e-68 262.3 190 79.5
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.3e-68 262.3 152 89.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 5.6e-68 261.9 152 89.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.6e-68 261.9 152 89.5
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.6e-68 261.9 152 89.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.3e-68 261.5 152 88.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 7.3e-68 261.5 152 88.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 7.3e-68 261.5 152 88.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 9.5e-68 261.2 152 88.8
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.2e-67 260.8 152 88.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 153 89.5
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 153 89.5
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-67 260.0 152 88.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-67 260.0 152 88.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.1e-67 260.0 152 88.8
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.8e-67 259.6 152 88.2
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 152 88.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 3.6e-67 259.2 153 88.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.6e-67 259.2 152 88.2
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 4.7e-67 258.8 152 87.5
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 6.2e-67 258.5 152 88.2
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 8.1e-67 258.1 152 87.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 8.1e-67 258.1 152 87.5
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.1e-67 258.1 150 88.0
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-66 257.7 152 87.5
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.4e-66 257.3 152 88.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.8e-66 256.9 152 87.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.3e-66 256.5 152 85.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.1e-66 256.1 152 86.8
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.1e-66 256.1 149 89.9
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.8e-66 255.0 147 89.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.9e-66 254.6 152 84.9
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 8.9e-66 254.6 152 86.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.4e-65 252.7 152 87.5
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 3.4e-65 252.7 151 83.4
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.4e-65 252.7 152 86.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.8e-65 251.9 147 87.8
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 152 86.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 153 85.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.2e-64 250.0 151 84.1
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-64 249.6 152 86.2
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.9e-64 249.6 153 85.0
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.7e-64 249.2 152 84.2
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.7e-64 249.2 156 84.6
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.9e-64 248.8 146 87.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 6.4e-64 248.4 153 86.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 6.4e-64 248.4 153 84.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.1e-63 247.7 154 83.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.1e-63 247.7 154 83.1
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.1e-63 247.7 154 83.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.9e-63 246.9 153 85.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.1e-63 245.7 152 82.9
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 4.1e-63 245.7 152 82.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.1e-63 245.7 153 83.7
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 5.4e-63 245.4 152 83.6
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.2e-63 244.6 153 82.4
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.2e-63 244.6 153 82.4
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.2e-62 244.2 153 84.3
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.6e-62 243.8 153 84.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.7e-62 243.0 153 81.7
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.5e-62 242.7 152 83.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.5e-62 242.7 152 83.6
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.6e-62 242.3 152 82.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.6e-62 242.3 152 82.9
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.0e-62 241.9 152 81.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-61 240.7 152 82.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.3e-61 240.7 155 81.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.0e-61 239.6 153 83.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 3.9e-61 239.2 152 81.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.6e-61 238.4 152 81.6
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.1e-60 237.7 152 80.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-60 236.9 152 82.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.3e-60 235.7 143 84.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.3e-60 235.0 148 81.8
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.6e-59 233.8 157 80.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.1e-59 233.4 153 81.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.1e-59 233.4 152 81.6
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.8e-59 233.0 152 81.6
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 2.8e-59 233.0 149 82.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.1e-59 231.5 146 81.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.6e-57 226.5 132 89.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.4e-57 226.1 144 81.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 9.9e-57 224.6 151 78.1
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.3e-56 224.2 152 78.9
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.0e-53 214.5 138 81.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 6.6e-53 211.8 153 73.9
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.6e-51 206.1 151 72.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.4e-50 203.4 121 86.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.4e-49 199.5 152 71.7
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.4e-49 199.5 152 71.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 4.4e-49 199.1 127 81.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 7.1e-47 191.8 110 90.9
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.1e-47 191.8 152 70.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-46 190.7 122 82.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-46 189.5 122 81.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 7.8e-46 188.3 148 66.2
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-45 186.0 156 66.0
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.4e-42 176.8 152 63.8
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.0e-41 173.7 126 73.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.4e-39 167.5 152 61.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.7e-38 163.3 152 62.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.5e-38 162.9 95 89.5
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 9.6e-36 154.8 94 83.0
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 4.5e-33 146.0 111 72.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.8e-29 134.0 148 53.4
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.7e-29 132.1 148 52.7
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.7e-29 132.1 148 52.7
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.7e-29 132.1 148 52.7
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.1e-27 127.1 140 51.4
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.7e-20 101.7 144 47.2
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-18 98.2 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-14 82.0 69 65.2
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 5.7e-12 75.9 43 83.7
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.7e-12 75.9 45 80.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.3e-11 74.7 64 65.6
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.7e-08 64.3 67 55.2


User provided reference genes

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