Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01034467001 Vitis vinifera HOM05D005687 ORTHO05D027697 1.4e-40 169.1 79 100.0
TWI59G0019 Tripterygium wilfordii HOM05D005687 ORTHO05D007098 1.1e-21 106.3 77 66.2
Eucgr.F03000 Eucalyptus grandis HOM05D005687 ORTHO05D007098 1.6e-20 102.4 78 62.8
Ciclev10000582m.g Citrus clementina HOM05D005687 ORTHO05D007098 1.3e-19 99.4 73 65.8
Potri.013G107800 Populus trichocarpa HOM05D005687 ORTHO05D007098 1.5e-18 95.9 72 68.1
FAN04G0407 Fragaria x ananassa HOM05D005687 ORTHO05D007098 7.3e-18 93.6 69 63.8
Manes.18G104200 Manihot esculenta HOM05D005687 ORTHO05D007098 7.3e-18 93.6 74 66.2
FvH4_5g32030 Fragaria vesca HOM05D005687 ORTHO05D007098 1.6e-17 92.4 82 56.1
FAN18G2804 Fragaria x ananassa HOM05D005687 ORTHO05D007098 2.1e-17 92.0 82 56.1
MD15G1407900 Malus domestica HOM05D005687 ORTHO05D007098 2.8e-17 91.7 78 62.8
AL2G31710 Arabidopsis lyrata HOM05D005687 ORTHO05D007098 4.8e-17 90.9 79 62.0
Nn5g27549 Nelumbo nucifera HOM05D005687 ORTHO05D007098 4.8e-17 90.9 77 61.0
THA.LOC104800128 Tarenaya hassleriana HOM05D005687 ORTHO05D007098 4.8e-17 90.9 80 60.0
TAR376G0067 Trochodendron aralioides HOM05D005687 ORTHO05D007098 4.8e-17 90.9 73 63.0
AT1G72090 Arabidopsis thaliana HOM05D005687 ORTHO05D007098 8.1e-17 90.1 79 62.0
QL02p026060 Quercus lobata HOM05D005687 ORTHO05D007098 8.1e-17 90.1 69 65.2
Sc01g0001920 Simmondsia chinensis HOM05D005687 ORTHO05D007098 8.1e-17 90.1 73 60.3
CANSAT35G0683 Cannabis sativa HOM05D005687 ORTHO05D007098 1.1e-16 89.7 71 64.8
AUR62004616 Chenopodium quinoa HOM05D005687 ORTHO05D007098 1.1e-16 89.7 82 59.8
MD08G1219300 Malus domestica HOM05D005687 ORTHO05D007098 1.4e-16 89.4 78 61.5
Thecc.08G189500 Theobroma cacao HOM05D005687 ORTHO05D007098 1.8e-16 89.0 77 63.6
Gohir.A05G273000 Gossypium hirsutum HOM05D005687 ORTHO05D007098 2.4e-16 88.6 70 67.1
Gorai.009G288500 Gossypium raimondii HOM05D005687 ORTHO05D007098 2.4e-16 88.6 70 67.1
Cpa.g.sc66.10 Carica papaya HOM05D005687 ORTHO05D007098 3.1e-16 88.2 87 56.3
Sp5g27150 Schrenkiella parvula HOM05D005687 ORTHO05D007098 3.1e-16 88.2 79 59.5
A07p38240 Brassica napus HOM05D005687 ORTHO05D007098 4.0e-16 87.8 80 57.5
BolC6t39676H Brassica oleracea HOM05D005687 ORTHO05D007098 4.0e-16 87.8 80 57.5
BraA07t31389Z Brassica rapa HOM05D005687 ORTHO05D007098 4.0e-16 87.8 80 57.5
vmacro00992 Vaccinium macrocarpon HOM05D005687 ORTHO05D007098 4.0e-16 87.8 79 62.0
BcaB03g14944 Brassica carinata HOM05D005687 ORTHO05D007098 5.3e-16 87.4 79 57.0
Carub.0002s1887 Capsella rubella HOM05D005687 ORTHO05D007098 5.3e-16 87.4 80 60.0
Prupe.1G553700 Prunus persica HOM05D005687 ORTHO05D007098 5.3e-16 87.4 81 58.0
CARHR064900 Cardamine hirsuta HOM05D005687 ORTHO05D007098 6.9e-16 87.0 79 58.2
Dinv41744 Davidia involucrata HOM05D005687 ORTHO05D007098 6.9e-16 87.0 77 64.9
BcaC08g46660 Brassica carinata HOM05D005687 ORTHO05D007098 9.0e-16 86.7 80 56.2
Migut.C01307 Erythranthe guttata HOM05D005687 ORTHO05D007098 9.0e-16 86.7 70 64.3
CAN.G155.2 Capsicum annuum HOM05D005687 ORTHO05D007098 1.2e-15 86.3 73 65.8
PSO170G1542 Papaver somniferum HOM05D005687 ORTHO05D007098 1.2e-15 86.3 82 56.1
C06p46310 Brassica napus HOM05D005687 ORTHO05D007098 1.5e-15 85.9 80 56.2
AUR62022645 Chenopodium quinoa HOM05D005687 ORTHO05D007098 1.5e-15 85.9 73 63.0
Actinidia01555 Actinidia chinensis HOM05D005687 ORTHO05D007098 2.0e-15 85.5 78 60.3
Cc10_g10120 Coffea canephora HOM05D005687 ORTHO05D007098 2.0e-15 85.5 72 63.9
CsaV3_5G040460 Cucumis sativus L. HOM05D005687 ORTHO05D007098 2.0e-15 85.5 79 59.5
Thhalv10018307m.g Eutrema salsugineum HOM05D005687 ORTHO05D007098 2.0e-15 85.5 79 58.2
PSO017G1535 Papaver somniferum HOM05D005687 ORTHO05D007098 2.0e-15 85.5 82 56.1
PGSC0003DMG401009270 Solanum tuberosum HOM05D005687 ORTHO05D007098 2.6e-15 85.1 73 65.8
ClCG08G000280 Citrullus lanatus HOM05D005687 ORTHO05D007098 3.4e-15 84.7 79 57.0
Peaxi162Scf00391g00732 Petunia axillaris HOM05D005687 ORTHO05D007098 3.4e-15 84.7 73 64.4
MSTRG.1558 Avicennia marina HOM05D005687 ORTHO05D007098 4.5e-15 84.3 71 63.4
CSS0048983 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 4.5e-15 84.3 77 59.7
RcHm_v2.0_Chr7g0228031 Rosa chinensis HOM05D005687 ORTHO05D007098 4.5e-15 84.3 76 59.2
Lsat_1_v5_gn_1_12201 Lactuca sativa HOM05D005687 ORTHO05D007098 5.8e-15 84.0 73 58.9
Solyc11g022390.2 Solanum lycopersicum HOM05D005687 ORTHO05D007098 5.8e-15 84.0 73 63.0
Sopen11g011260 Solanum pennellii HOM05D005687 ORTHO05D007098 5.8e-15 84.0 73 64.4
Aa31LG4G8560 Aethionema arabicum HOM05D005687 ORTHO05D007098 7.6e-15 83.6 79 57.0
MELO3C022220.2 Cucumis melo HOM05D005687 ORTHO05D007098 7.6e-15 83.6 79 55.7
FAN08G1133 Fragaria x ananassa HOM05D005687 ORTHO05D007098 1.3e-14 82.8 74 56.8
SGA_v2.0_scaffold118G32517 Striga asiatica HOM05D005687 ORTHO05D007098 1.7e-14 82.4 74 60.8
Nitab4.5_0001534g0050 Nicotiana tabacum HOM05D005687 ORTHO05D007098 2.2e-14 82.0 73 60.3
SalBow6G3036 Salvia bowleyana HOM05D005687 ORTHO05D007098 6.4e-14 80.5 74 59.5
EL10Ac1g00122 Beta vulgaris HOM05D005687 ORTHO05D007098 2.4e-13 78.6 71 59.2
CDE06G1536 Ceratophyllum demersum HOM05D005687 ORTHO05D007098 2.4e-13 78.6 70 54.3
Zm00001eb422680 Zea mays HOM05D005687 ORTHO05D007098 3.2e-13 78.2 71 56.3
CSS0035020 Camellia sinensis var. sinensis HOM05D005687 ORTHO05D007098 7.1e-13 77.0 81 56.8
PGR042G3796 Punica granatum HOM05D005687 ORTHO05D007098 1.2e-12 76.3 75 54.7
Atru.chr13.2348 Acer truncatum HOM05D005687 ORTHO05D007098 2.7e-12 75.1 101 43.6
TPR.G34137 Trifolium pratense HOM05D005687 ORTHO05D007098 3.5e-12 74.7 69 58.0
ATR1134G072 Amborella trichopoda HOM05D005687 ORTHO05D007098 4.6e-12 74.3 69 53.6
unitig_32.g11184 Utricularia gibba HOM05D001035 ORTHO05D007098 4.6e-12 74.3 72 56.9
VMungo1127G0635 Vigna mungo HOM05D005687 ORTHO05D007098 4.6e-12 74.3 69 58.0
Glyma.12G001400 Glycine max HOM05D005687 ORTHO05D007098 1.0e-11 73.2 70 57.1
Phvul.011G001500 Phaseolus vulgaris HOM05D005687 ORTHO05D007098 1.3e-11 72.8 72 58.3
ECA247G3799 Erigeron canadensis HOM05D005687 ORTHO05D007098 1.8e-11 72.4 76 53.9
Ca_19701_v3 Cicer arietinum L. HOM05D005687 ORTHO05D007098 3.9e-11 71.2 69 55.1
Lj3g0026050 Lotus japonicus HOM05D005687 ORTHO05D007098 5.1e-11 70.9 69 55.1
Medtr4g033210 Medicago truncatula HOM05D005687 ORTHO05D007098 8.7e-11 70.1 71 56.3
HPP92_016134 Vanilla planifolia HOM05D005687 ORTHO05D007098 8.7e-11 70.1 69 50.7
DCAR_017367 Daucus carota HOM05D005687 ORTHO05D007098 1.1e-10 69.7 77 51.9
HanXRQChr02g0044211 Helianthus annuus HOM05D005687 ORTHO05D007098 1.9e-10 68.9 73 53.4
Os04g0434300 Oryza sativa ssp. japonica HOM05D005687 ORTHO05D007098 1.9e-10 68.9 68 52.9
Psat7g144520 Pisum sativum HOM05D005687 ORTHO05D007098 1.9e-10 68.9 71 54.9
Aqoxy5G02668 Aquilegia oxysepala HOM05D005687 ORTHO05D007098 2.5e-10 68.6 89 42.7
Lalb_Chr19g0140501 Lupinus albus HOM05D005687 ORTHO05D007098 2.5e-10 68.6 69 50.7
arahy.Tifrunner.gnm1.ann1.BDG91C Arachis hypogaea HOM05D005687 ORTHO05D007098 7.4e-10 67.0 73 53.4
SEGI_07740 Sequoiadendron giganteum HOM05D005687 ORTHO05D027697 3.7e-09 64.7 70 51.4
Sabra13G0093200 Salix brachista HOM05D005687 ORTHO05D007098 4.8e-09 64.3 56 60.7
BcaB03g14935 Brassica carinata HOM05D005687 ORTHO05D027697 9.0e-08 60.1 69 47.8
Lsat_1_v5_gn_4_158461 Lactuca sativa HOM05D006498 ORTHO05D006377 1.7e-06 55.8 59 54.2
Hund16781 Selenicereus undatus HOM05D005687 ORTHO05D007098 1.7e-06 55.8 60 56.7
Nitab4.5_0003826g0010 Nicotiana tabacum HOM05D005687 ORTHO05D007098 2.9e-06 55.1 60 55.0


User provided reference genes

Program Settings