Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.3e-134 483.0 233 100.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.3e-91 339.3 242 69.4
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-89 333.6 236 69.1
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.8e-87 323.9 236 68.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.3e-86 323.6 233 69.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.3e-86 323.6 233 68.2
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.2e-86 322.8 235 67.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 5.4e-85 318.2 233 67.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.4e-85 318.2 250 64.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.2e-84 317.0 207 72.9
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-84 316.6 241 65.6
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.6e-84 316.6 234 67.5
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.1e-84 316.2 235 64.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 6.0e-84 314.7 242 63.2
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.7e-83 313.2 230 66.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 8.6e-83 310.8 233 65.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.5e-82 310.1 235 64.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.6e-82 308.1 236 64.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 3.6e-81 305.4 233 64.4
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.3e-80 302.8 234 63.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 5.2e-80 301.6 233 63.9
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.2e-79 300.4 233 63.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.2e-79 300.4 242 62.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 5.8e-79 298.1 235 62.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.8e-78 295.4 233 60.5
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.9e-78 295.0 233 61.4
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.9e-78 295.0 243 60.9
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.9e-78 295.0 233 63.5
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 8.4e-78 294.3 235 61.3
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.1e-77 292.0 237 59.1
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.2e-76 290.4 236 62.3
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.6e-76 290.0 235 60.0
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.8e-76 287.7 236 59.3
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-75 287.3 236 60.2
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.3e-75 287.0 236 59.7
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-75 287.0 236 61.9
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.3e-75 286.2 234 59.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-75 286.2 237 60.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.9e-75 285.4 234 59.8
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-75 284.6 233 61.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 8.6e-75 284.3 237 58.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.9e-74 283.1 235 60.0
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.3e-74 282.3 233 60.5
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 5.6e-74 281.6 233 60.9
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.3e-74 281.2 233 61.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.6e-73 280.0 233 58.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.6e-73 280.0 233 61.4
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 6.2e-73 278.1 235 59.1
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-72 276.9 235 60.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.1e-72 275.8 234 58.1
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.1e-72 275.8 243 58.0
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.0e-72 275.4 240 60.4
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.0e-72 275.4 233 58.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.2e-72 275.0 237 59.1
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.2e-72 275.0 233 60.5
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.9e-72 274.2 237 59.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.2e-71 273.9 233 59.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.2e-71 273.9 236 58.9
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-71 273.1 237 60.3
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.6e-71 272.7 260 54.2
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.9e-70 269.2 241 56.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.9e-70 269.2 240 60.0
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 4.9e-70 268.5 233 58.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.9e-70 268.5 231 59.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.9e-70 268.5 241 56.8
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.4e-69 266.2 251 56.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.4e-69 266.2 241 56.8
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 3.2e-69 265.8 241 57.7
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.2e-69 265.4 241 55.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-69 265.0 241 56.0
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.1e-69 264.6 234 58.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.1e-69 264.6 234 58.1
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 9.3e-69 264.2 251 55.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 9.3e-69 264.2 251 54.6
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.6e-68 263.5 241 56.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.6e-68 263.5 241 54.4
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.5e-68 262.3 241 56.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 6.0e-68 261.5 243 56.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 6.0e-68 261.5 241 56.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.0e-68 261.5 240 53.3
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-67 260.8 242 56.6
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-67 260.8 242 56.6
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.3e-67 259.6 248 55.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.6e-67 258.1 241 54.8
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-67 258.1 216 60.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.5e-66 256.9 241 54.8
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.3e-66 255.8 236 54.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.3e-66 255.4 239 53.1
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.3e-66 255.4 239 53.1
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 7.3e-66 254.6 242 56.2
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.6e-65 252.3 242 54.5
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 3.6e-65 252.3 233 54.5
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 4.8e-65 251.9 244 50.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 8.1e-65 251.1 240 55.4
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-64 250.4 242 52.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.8e-64 250.0 227 55.1
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-63 247.3 239 51.5
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-63 247.3 233 54.9
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.0e-63 246.5 238 50.0
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.4e-63 245.7 242 52.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 9.9e-63 244.2 224 57.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-62 243.4 203 60.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.1e-61 240.7 212 57.5
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.4e-61 240.4 238 51.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.4e-61 239.6 234 52.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-61 239.6 203 61.1
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.4e-61 239.6 240 52.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 3.2e-61 239.2 241 51.5
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 4.2e-61 238.8 240 51.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.6e-60 236.9 234 51.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.6e-60 236.9 262 50.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.6e-60 236.9 262 50.8
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.1e-60 236.5 234 52.6
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-60 236.5 239 50.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.5e-60 235.7 224 53.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 6.0e-60 235.0 246 51.2
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.0e-59 234.2 248 51.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-59 234.2 234 51.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-59 234.2 237 54.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-59 233.8 235 51.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.3e-59 233.8 240 51.2
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.3e-59 233.8 240 51.2
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.3e-59 233.8 240 50.8
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.3e-59 233.0 218 55.0
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.3e-59 233.0 241 49.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.0e-59 232.6 236 53.4
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.9e-59 232.3 234 51.7
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.1e-59 231.9 236 53.0
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.5e-58 230.3 238 50.8
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-58 230.3 231 51.1
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.5e-58 230.3 231 51.1
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.5e-58 230.3 240 49.6
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.9e-58 229.9 231 51.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.6e-58 228.4 231 48.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.6e-58 227.6 233 49.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 9.6e-58 227.6 241 53.5
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.8e-57 226.1 210 57.6
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-57 225.7 216 51.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.4e-56 223.0 235 50.2
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 6.9e-56 221.5 231 50.6
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.4e-55 219.2 227 48.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 4.2e-53 212.2 242 49.2
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 3.5e-52 209.1 181 59.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 6.0e-52 208.4 235 46.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.3e-51 206.5 234 48.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 6.7e-51 204.9 241 49.0
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.7e-51 204.9 256 45.7
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 9.6e-50 201.1 219 50.2
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.2e-49 198.0 142 66.9
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-47 193.4 206 48.1
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.0e-47 193.4 240 44.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.0e-47 193.4 162 60.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.8e-47 191.8 226 45.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-45 184.9 183 50.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.6e-44 182.2 164 56.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 8.7e-43 177.9 142 59.2
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-41 174.1 149 61.7
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 6.3e-41 171.8 242 41.3
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.0e-39 166.8 124 63.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.5e-37 159.8 158 53.2
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 7.9e-36 154.8 135 60.0
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.7e-34 147.9 107 68.2
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.2e-31 141.0 266 33.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-31 140.2 200 43.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 4.5e-31 139.0 258 33.7
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.9e-30 136.3 118 57.6
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.9e-28 128.3 93 66.7
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.0e-27 127.9 127 52.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.3e-27 126.7 118 58.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 5.9e-23 112.1 89 62.9
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 8.5e-22 108.2 116 49.1
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.7e-20 103.2 97 52.6
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.8e-19 100.5 80 61.2
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.3e-19 100.1 116 47.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.5e-18 97.4 96 52.1
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 7.7e-15 85.1 165 33.3
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-12 77.8 126 41.3
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 5.3e-08 62.4 74 45.9
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 5.3e-08 62.4 52 48.1


User provided reference genes

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