Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.5e-217 759.2 392 100.0
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.0e-212 742.3 393 98.7
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.2e-209 733.0 392 96.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 9.4e-191 670.2 388 91.2
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.5e-164 583.2 381 78.5
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.5e-164 583.2 381 79.8
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 1.7e-144 516.5 378 71.4
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.6e-144 514.2 378 69.3
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.9e-143 513.1 379 68.3
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 2.5e-143 512.7 376 69.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 7.3e-143 511.1 376 69.1
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 9.6e-143 510.8 386 69.4
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.6e-142 510.0 376 72.1
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.6e-142 508.8 377 71.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 8.9e-141 504.2 376 68.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.2e-140 503.8 378 70.9
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.2e-140 503.8 376 70.2
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.0e-140 503.1 376 69.9
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 2.6e-140 502.7 382 69.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 4.4e-140 501.9 380 69.5
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 5.8e-140 501.5 376 68.1
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.8e-140 501.5 378 67.5
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 1.7e-139 500.0 379 68.1
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.9e-139 499.2 377 67.1
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 4.9e-139 498.4 381 69.3
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 6.4e-139 498.0 377 69.8
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.4e-139 497.7 379 68.9
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 1.1e-138 497.3 377 68.7
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.4e-138 496.9 377 69.2
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.4e-138 496.9 391 66.5
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.4e-138 496.9 376 69.1
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.4e-138 496.9 376 69.4
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 1.9e-138 496.5 376 67.3
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 3.2e-138 495.7 376 67.6
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.2e-138 495.7 376 69.4
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 7.1e-138 494.6 391 66.0
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 7.1e-138 494.6 376 67.3
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 9.3e-138 494.2 378 66.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.2e-137 493.8 376 68.1
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.2e-137 493.8 378 67.2
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.6e-137 493.4 378 66.4
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 2.1e-137 493.0 378 66.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 3.5e-137 492.3 377 66.6
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 6.0e-137 491.5 377 67.4
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.3e-136 490.3 378 68.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.7e-136 490.0 377 66.3
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.7e-136 490.0 378 65.9
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.7e-136 490.0 378 65.9
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.7e-136 490.0 391 66.0
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.9e-136 488.8 376 67.0
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.9e-136 488.8 379 67.3
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.1e-136 488.4 391 65.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 6.6e-136 488.0 379 66.0
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 6.6e-136 488.0 378 66.1
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.5e-135 486.9 380 65.5
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 2.5e-135 486.1 379 65.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 3.3e-135 485.7 379 66.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.1e-134 483.0 379 67.5
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.6e-134 482.3 376 67.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 4.8e-134 481.9 376 65.7
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 4.8e-134 481.9 376 65.7
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 6.2e-134 481.5 380 65.5
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.8e-133 479.9 389 65.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 5.3e-133 478.4 387 65.9
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 9.0e-133 477.6 379 64.4
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.0e-132 476.5 379 66.0
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.0e-132 476.5 377 64.7
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 3.4e-132 475.7 391 63.7
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.5e-132 475.3 391 63.7
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.8e-132 474.9 376 65.2
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.2e-131 473.0 376 64.6
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.9e-131 472.6 387 64.3
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.8e-131 472.2 387 64.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 8.4e-131 471.1 385 66.2
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-130 470.7 413 62.2
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.4e-130 470.3 376 64.4
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.9e-130 469.9 385 64.4
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 3.2e-130 469.2 383 65.5
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 5.4e-130 468.4 385 65.7
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 9.3e-130 467.6 383 64.5
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 1.6e-129 466.8 385 65.5
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-129 466.8 389 62.7
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 3.5e-129 465.7 389 62.5
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.5e-129 465.7 402 62.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 3.5e-129 465.7 377 63.4
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.5e-127 459.5 376 64.6
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 3.3e-127 459.1 379 62.8
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 5.6e-127 458.4 380 63.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 9.6e-127 457.6 381 63.0
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 9.6e-127 457.6 381 64.3
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.3e-126 457.2 385 64.2
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.3e-126 457.2 377 63.4
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.1e-126 456.4 380 62.6
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 8.1e-126 454.5 406 59.9
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 4.0e-125 452.2 381 63.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.5e-124 450.3 379 62.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 2.6e-124 449.5 383 61.6
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 2.6e-124 449.5 383 60.8
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.3e-123 447.2 363 64.2
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 4.9e-123 445.3 383 61.6
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 4.9e-123 445.3 383 61.4
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.4e-122 443.0 375 62.1
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 1.8e-120 436.8 377 61.0
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 4.0e-117 425.6 326 67.8
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.0e-116 423.3 335 65.4
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.3e-115 420.6 387 59.7
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 9.3e-114 414.5 380 57.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-112 409.8 361 60.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.9e-112 409.1 391 56.0
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.2e-108 397.5 364 61.0
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 4.5e-108 395.6 378 55.0
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.6e-108 394.8 207 99.0
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.8e-107 392.5 323 66.9
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 4.2e-106 389.0 377 55.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.9e-104 382.5 375 55.7
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 5.1e-104 382.1 385 51.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.5e-103 379.8 333 61.3
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.9e-99 366.3 335 58.8
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.1e-98 364.4 314 61.5
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.2e-97 360.9 376 55.1
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.3e-94 350.9 374 52.4
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.3e-94 348.6 290 63.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.8e-93 347.1 326 55.8
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 5.0e-91 339.0 376 48.9
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.1e-85 321.2 169 98.2
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 2.0e-71 273.9 220 63.6
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.2e-65 254.6 250 52.4
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.3e-62 244.6 164 76.8
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-61 241.5 245 53.1
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.4e-61 241.1 392 38.0
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 5.0e-59 232.6 330 44.8
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.8e-52 208.8 162 69.8
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.8e-49 200.3 323 36.2
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.0e-48 196.4 170 62.9
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 5.8e-47 192.6 177 53.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.7e-46 189.9 170 61.8
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 5.1e-35 152.9 136 62.5
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-34 151.8 136 61.8
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.9e-34 151.0 230 36.1
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 4.7e-33 146.4 84 91.7
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.5e-31 141.4 165 45.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.7e-28 130.6 115 63.5
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.1e-25 119.0 87 60.9
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.1e-21 105.9 81 66.7
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 3.4e-15 87.0 149 36.9
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-13 82.0 215 31.2
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 3.5e-12 77.0 45 80.0
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 3.5e-12 77.0 45 80.0
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 4.3e-10 70.1 89 42.7


User provided reference genes

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