Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0276 Fragaria x ananassa HOM05D000113 ORTHO05D013364 8.9e-54 213.8 144 100.0
FAN07G0796 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.3e-49 199.9 102 98.0
FAN17G0324 Fragaria x ananassa HOM05D000113 ORTHO05D003010 2.3e-49 199.1 104 96.2
FvH4_4g07500 Fragaria vesca HOM05D000113 ORTHO05D003010 1.2e-47 193.4 100 96.0
FAN12G1473 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.2e-47 193.4 100 96.0
RcHm_v2.0_Chr4g0400041 Rosa chinensis HOM05D000113 ORTHO05D003010 6.8e-46 187.6 101 91.1
FAN03G2693 Fragaria x ananassa HOM05D000113 ORTHO05D003010 4.3e-40 168.3 100 83.0
FAN10G0181 Fragaria x ananassa HOM05D000113 ORTHO05D003010 2.1e-39 166.0 100 82.0
RcHm_v2.0_Chr1g0351781 Rosa chinensis HOM05D000113 ORTHO05D003010 4.7e-39 164.9 102 80.4
FvH4_7g12750 Fragaria vesca HOM05D000113 ORTHO05D003010 2.2e-36 156.0 97 80.4
FAN06G1832 Fragaria x ananassa HOM05D000113 ORTHO05D003010 2.2e-36 156.0 97 80.4
MD09G1231900 Malus domestica HOM05D000113 ORTHO05D003010 2.4e-30 136.0 103 65.0
MD17G1229800 Malus domestica HOM05D000113 ORTHO05D003010 8.4e-28 127.5 86 72.1
Rhsim03G0231700 Rhododendron simsii HOM05D000113 ORTHO05D003010 3.3e-24 115.5 93 61.3
Glyma.14G217400 Glycine max HOM05D000113 ORTHO05D003010 7.3e-24 114.4 104 59.6
CiPaw.08G064400 Carya illinoinensis HOM05D000113 ORTHO05D003010 9.6e-24 114.0 78 70.5
Haze_22607 Corylus avellana HOM05D000113 ORTHO05D003010 9.6e-24 114.0 71 76.1
Cfa013925 Carpinus fangiana HOM05D000113 ORTHO05D003010 1.2e-23 113.6 70 77.1
MSTRG.19506 Avicennia marina HOM05D000113 ORTHO05D003010 1.6e-23 113.2 88 62.5
Lsat_1_v5_gn_7_36800 Lactuca sativa HOM05D000113 ORTHO05D003010 2.1e-23 112.8 87 64.4
Hma1.2p1_0785F.1_g217430 Hydrangea macrophylla HOM05D000113 ORTHO05D003010 3.6e-23 112.1 94 59.6
CSS0015150 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D003010 4.7e-23 111.7 97 61.9
Prupe.2G077900 Prunus persica HOM05D000113 ORTHO05D003010 6.2e-23 111.3 73 71.2
Potri.015G024400 Populus trichocarpa HOM05D000113 ORTHO05D003010 8.1e-23 110.9 79 67.1
Actinidia25246 Actinidia chinensis HOM05D000113 ORTHO05D003010 1.1e-22 110.5 94 59.6
Cc06_g11510 Coffea canephora HOM05D000113 ORTHO05D003010 1.1e-22 110.5 78 67.9
VMungo0023G0001 Vigna mungo HOM05D000113 ORTHO05D013364 1.1e-22 110.5 96 61.5
Lj4C294T4 Lonicera japonica HOM05D000113 ORTHO05D003010 2.4e-22 109.4 99 60.6
Sabra15G0018900 Salix brachista HOM05D000113 ORTHO05D003010 2.4e-22 109.4 80 65.0
Sabra12G0023400 Salix brachista HOM05D000113 ORTHO05D003010 3.1e-22 109.0 93 62.4
CiPaw.09G132800 Carya illinoinensis HOM05D000113 ORTHO05D003010 4.0e-22 108.6 76 68.4
Sc08g0008550 Simmondsia chinensis HOM05D000113 ORTHO05D003010 4.0e-22 108.6 84 64.3
TWI56G1163 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 4.0e-22 108.6 84 65.5
Potri.012G034200 Populus trichocarpa HOM05D000113 ORTHO05D003010 6.9e-22 107.8 78 65.4
vmacro17253 Vaccinium macrocarpon HOM05D000113 ORTHO05D003010 6.9e-22 107.8 103 55.3
Dinv42327 Davidia involucrata HOM05D000113 ORTHO05D003010 9.0e-22 107.5 73 72.6
QL02p011025 Quercus lobata HOM05D000113 ORTHO05D003010 1.5e-21 106.7 79 68.4
Aqoxy1G02440 Aquilegia oxysepala HOM05D000113 ORTHO05D003010 2.0e-21 106.3 86 60.5
TAR627G0817 Trochodendron aralioides HOM05D000113 ORTHO05D003010 2.0e-21 106.3 77 66.2
DCAR_011968 Daucus carota HOM05D000113 ORTHO05D003010 3.4e-21 105.5 105 56.2
Sc18g0002170 Simmondsia chinensis HOM05D000113 ORTHO05D003010 3.4e-21 105.5 81 64.2
Nn1g04078 Nelumbo nucifera HOM05D000113 ORTHO05D003010 5.8e-21 104.8 72 70.8
SGA_v2.0_scaffold62G21621 Striga asiatica HOM05D000113 ORTHO05D003010 5.8e-21 104.8 102 55.9
Sopen01g053030 Solanum pennellii HOM05D000113 ORTHO05D003010 1.3e-20 103.6 77 66.2
TAR626G0761 Trochodendron aralioides HOM05D000113 ORTHO05D003010 2.2e-20 102.8 77 66.2
HPP92_019988 Vanilla planifolia HOM05D000113 ORTHO05D003010 2.2e-20 102.8 104 56.7
HanXRQChr03g0060351 Helianthus annuus HOM05D000113 ORTHO05D003010 2.9e-20 102.4 102 52.0
arahy.Tifrunner.gnm1.ann1.XPB1EQ Arachis hypogaea HOM05D000113 ORTHO05D003010 3.8e-20 102.1 111 55.9
Lalb_Chr22g0354421 Lupinus albus HOM05D000113 ORTHO05D003010 3.8e-20 102.1 77 63.6
MBI07_g29113_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D003010 3.8e-20 102.1 77 68.8
Oeu000323.1 Olea europaea HOM05D000113 ORTHO05D003010 3.8e-20 102.1 78 62.8
SalBow6G6328 Salvia bowleyana HOM05D000113 ORTHO05D003010 4.9e-20 101.7 77 63.6
Hund06671 Selenicereus undatus HOM05D000113 ORTHO05D003010 4.9e-20 101.7 80 66.2
Solyc01g110990.2 Solanum lycopersicum HOM05D000113 ORTHO05D003010 4.9e-20 101.7 77 64.9
Sopen07g019130 Solanum pennellii HOM05D000113 ORTHO05D003010 1.1e-19 100.5 77 63.6
Solyc07g039550.4 Solanum lycopersicum HOM05D000113 ORTHO05D003010 1.4e-19 100.1 76 64.5
TWI12G0166 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 1.4e-19 100.1 78 62.8
Dinv36775 Davidia involucrata HOM05D000113 ORTHO05D003010 1.9e-19 99.8 67 73.1
ECA234G4749 Erigeron canadensis HOM05D000113 ORTHO05D003010 1.9e-19 99.8 102 55.9
Migut.J00584 Erythranthe guttata HOM05D000113 ORTHO05D003010 3.2e-19 99.0 76 64.5
PGSC0003DMG400022045 Solanum tuberosum HOM05D000113 ORTHO05D003010 3.2e-19 99.0 76 63.2
CANSAT01G3128 Cannabis sativa HOM05D000113 ORTHO05D003010 4.2e-19 98.6 78 65.4
CSS0025931 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D003010 5.4e-19 98.2 77 62.3
MELO3C004343.2 Cucumis melo HOM05D000113 ORTHO05D003010 7.1e-19 97.8 105 52.4
Ah.09g228140 Amaranthus hybridus HOM05D000113 ORTHO05D003010 1.2e-18 97.1 80 60.0
ATR0626G181 Amborella trichopoda HOM05D000113 ORTHO05D003010 1.2e-18 97.1 109 49.5
GSVIVG01029863001 Vitis vinifera HOM05D000113 ORTHO05D003010 1.2e-18 97.1 59 76.3
ClCG02G016270 Citrullus lanatus HOM05D000113 ORTHO05D003010 2.1e-18 96.3 105 51.4
Nitab4.5_0007115g0020 Nicotiana tabacum HOM05D000113 ORTHO05D003010 2.1e-18 96.3 76 63.2
Phvul.001G008600 Phaseolus vulgaris HOM05D000113 ORTHO05D003010 3.5e-18 95.5 114 51.8
EL10Ac8g19190 Beta vulgaris HOM05D000113 ORTHO05D003010 4.6e-18 95.1 78 61.5
Manes.05G123500 Manihot esculenta HOM05D000113 ORTHO05D003010 4.6e-18 95.1 75 65.3
Nitab4.5_0000095g0200 Nicotiana tabacum HOM05D000113 ORTHO05D003010 4.6e-18 95.1 73 63.0
Rhsim02G0021600 Rhododendron simsii HOM05D000113 ORTHO05D003010 6.0e-18 94.7 93 53.8
CARHR147560 Cardamine hirsuta HOM05D000113 ORTHO05D003010 7.8e-18 94.4 81 55.6
PSO729G0096 Papaver somniferum HOM05D000113 ORTHO05D003010 7.8e-18 94.4 88 55.7
Prupe.2G078300 Prunus persica HOM05D000113 ORTHO05D003010 7.8e-18 94.4 60 73.3
Glyma.17G256200 Glycine max HOM05D000113 ORTHO05D003010 1.0e-17 94.0 70 67.1
CAN.G588.10 Capsicum annuum HOM05D000113 ORTHO05D003010 1.3e-17 93.6 77 59.7
Thhalv10003563m.g Eutrema salsugineum HOM05D000113 ORTHO05D003010 3.0e-17 92.4 77 58.4
TWI56G0919 Tripterygium wilfordii HOM05D000113 ORTHO05D003010 3.0e-17 92.4 89 57.3
Thecc.08G041100 Theobroma cacao HOM05D000113 ORTHO05D003010 3.9e-17 92.0 57 75.4
AUR62029051 Chenopodium quinoa HOM05D000113 ORTHO05D003010 5.1e-17 91.7 78 59.0
COL.COLO4_32032 Corchorus olitorius HOM05D000113 ORTHO05D003010 5.1e-17 91.7 58 75.9
BraA06t27112Z Brassica rapa HOM05D000113 ORTHO05D003010 8.7e-17 90.9 81 53.1
Sp2g15670 Schrenkiella parvula HOM05D000113 ORTHO05D003010 1.1e-16 90.5 77 57.1
BcaC06g31065 Brassica carinata HOM05D000113 ORTHO05D003010 1.5e-16 90.1 77 53.2
Carub.0005s0455 Capsella rubella HOM05D000113 ORTHO05D003010 1.9e-16 89.7 77 54.5
Haze_01972 Corylus avellana HOM05D000113 ORTHO05D003010 3.3e-16 89.0 45 91.1
Gohir.D10G006800 Gossypium hirsutum HOM05D000113 ORTHO05D003010 5.6e-16 88.2 54 75.9
Gorai.011G007600 Gossypium raimondii HOM05D000113 ORTHO05D003010 5.6e-16 88.2 54 75.9
arahy.Tifrunner.gnm1.ann1.XAV62A Arachis hypogaea HOM05D000113 ORTHO05D003010 7.3e-16 87.8 72 63.9
COL.COLO4_17488 Corchorus olitorius HOM05D000113 ORTHO05D003010 7.3e-16 87.8 77 57.1
PSO339G4002 Papaver somniferum HOM05D000113 ORTHO05D003010 9.6e-16 87.4 77 57.1
PSO513G0027 Papaver somniferum HOM05D000113 ORTHO05D003010 9.6e-16 87.4 77 57.1
Cfa021361 Carpinus fangiana HOM05D000113 ORTHO05D003010 1.3e-15 87.0 74 59.5
AL5G15350 Arabidopsis lyrata HOM05D000113 ORTHO05D003010 1.6e-15 86.7 77 54.5
Duzib235G1354 Durio zibethinus HOM05D000113 ORTHO05D003010 1.6e-15 86.7 52 76.9
Gohir.D05G113200 Gossypium hirsutum HOM05D000113 ORTHO05D003010 1.6e-15 86.7 48 81.2
Gohir.A05G112700 Gossypium hirsutum HOM05D000113 ORTHO05D003010 2.1e-15 86.3 48 81.2
Gorai.009G117300 Gossypium raimondii HOM05D000113 ORTHO05D003010 2.1e-15 86.3 48 81.2
SEGI_00895 Sequoiadendron giganteum HOM05D000113 ORTHO05D003010 2.8e-15 85.9 106 46.2
A06p41930 Brassica napus HOM05D000113 ORTHO05D003010 4.8e-15 85.1 77 51.9
Atru.chr3.768 Acer truncatum HOM05D000113 ORTHO05D013364 6.2e-15 84.7 47 78.7
Eucgr.F03979 Eucalyptus grandis HOM05D000113 ORTHO05D003010 6.2e-15 84.7 70 62.9
Gohir.A10G006900 Gossypium hirsutum HOM05D000113 ORTHO05D003010 6.2e-15 84.7 54 74.1
Medtr1g023910 Medicago truncatula HOM05D000113 ORTHO05D013364 6.2e-15 84.7 51 74.5
Medtr1g023985 Medicago truncatula HOM05D000113 ORTHO05D003010 6.2e-15 84.7 51 74.5
Sed0017555 Sechium edule HOM05D000113 ORTHO05D003010 6.2e-15 84.7 76 55.3
AT3G26560 Arabidopsis thaliana HOM05D000113 ORTHO05D003010 1.1e-14 84.0 77 53.2
AUR62033946 Chenopodium quinoa HOM05D000113 ORTHO05D003010 1.1e-14 84.0 94 51.1
BcaC06g33903 Brassica carinata HOM05D000113 ORTHO05D003010 1.4e-14 83.6 76 52.6
C07p35540 Brassica napus HOM05D000113 ORTHO05D003010 1.4e-14 83.6 76 52.6
BolC7t44078H Brassica oleracea HOM05D000113 ORTHO05D003010 1.4e-14 83.6 76 52.6
arahy.Tifrunner.gnm1.ann1.00HR05 Arachis hypogaea HOM05D000113 ORTHO05D003010 2.4e-14 82.8 109 49.5
CAN.G32.8 Capsicum annuum HOM05D000113 ORTHO05D003010 3.1e-14 82.4 47 78.7
Cfa005892 Carpinus fangiana HOM05D000113 ORTHO05D013364 3.1e-14 82.4 58 65.5
Sabra15G0021400 Salix brachista HOM05D000113 ORTHO05D003010 4.0e-14 82.0 45 82.2
Haze_01701 Corylus avellana HOM05D000113 ORTHO05D003010 5.3e-14 81.6 60 65.0
CsaV3_2G004480 Cucumis sativus L. HOM05D000113 ORTHO05D003010 6.9e-14 81.3 104 44.2
TPR.G4128 Trifolium pratense HOM05D000113 ORTHO05D003010 6.9e-14 81.3 43 86.0
Ciclev10024740m.g Citrus clementina HOM05D000113 ORTHO05D003010 9.0e-14 80.9 42 88.1
BolC3t21019H Brassica oleracea HOM05D000113 ORTHO05D003010 1.5e-13 80.1 78 48.7
Ca_12452_v3 Cicer arietinum L. HOM05D000113 ORTHO05D003010 2.0e-13 79.7 43 83.7
Ca_30040_v3 Cicer arietinum L. HOM05D000113 ORTHO05D013364 2.0e-13 79.7 43 83.7
Lj5g0023045 Lotus japonicus HOM05D000113 ORTHO05D003010 2.6e-13 79.3 43 81.4
THA.LOC104811162 Tarenaya hassleriana HOM05D000113 ORTHO05D003010 3.4e-13 79.0 48 75.0
Pp3c2_27130 Physcomitrium patens HOM05D000113 ORTHO05D003010 4.5e-13 78.6 86 41.9
Ca_13404_v3 Cicer arietinum L. HOM05D000113 ORTHO05D003010 5.8e-13 78.2 47 74.5
Pp3c1_9270 Physcomitrium patens HOM05D000113 ORTHO05D003010 9.9e-13 77.4 108 38.9
Mapoly0026s0003 Marchantia polymorpha HOM05D000113 ORTHO05D003010 1.3e-12 77.0 102 39.2
Medtr1g114490 Medicago truncatula HOM05D000113 ORTHO05D003010 1.7e-12 76.6 43 81.4
TPR.G34355 Trifolium pratense HOM05D000113 ORTHO05D003010 1.7e-12 76.6 41 85.4
Aa31LG2G5990 Aethionema arabicum HOM05D000113 ORTHO05D003010 2.9e-12 75.9 45 73.3
CDE08G1416 Ceratophyllum demersum HOM05D000113 ORTHO05D003010 3.8e-12 75.5 61 62.3
Psat6g004240 Pisum sativum HOM05D000113 ORTHO05D003010 3.8e-12 75.5 41 82.9
Zm00001eb049020 Zea mays HOM05D000113 ORTHO05D013364 4.9e-12 75.1 84 46.4
BcaB03g12756 Brassica carinata HOM05D000113 ORTHO05D003010 1.1e-11 73.9 77 44.2
HanXRQChr10g0319431 Helianthus annuus HOM05D000113 ORTHO05D003010 1.4e-11 73.6 45 71.1
MD15G1069000 Malus domestica HOM05D000113 ORTHO05D003010 1.4e-11 73.6 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1233 Anthoceros agrestis HOM05D000113 ORTHO05D003010 1.9e-11 73.2 97 42.3
CDE02G3681 Ceratophyllum demersum HOM05D000113 ORTHO05D003010 1.9e-11 73.2 70 54.3
Zm00001eb374020 Zea mays HOM05D000113 ORTHO05D013364 1.9e-11 73.2 82 46.3
Zm00001eb394720 Zea mays HOM05D000113 ORTHO05D013364 1.9e-11 73.2 82 46.3
Nitab4.5_0006053g0010 Nicotiana tabacum HOM05D000113 ORTHO05D003010 2.4e-11 72.8 46 76.1
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 3.2e-11 72.4 84 46.4
TWI36G1599 Tripterygium wilfordii HOM05D000113 ORTHO05D013364 4.2e-11 72.0 106 40.6
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 4.2e-11 72.0 84 46.4
ECA247G2105 Erigeron canadensis HOM05D000113 ORTHO05D003010 5.4e-11 71.6 101 41.6
Prupe.1G422500 Prunus persica HOM05D000113 ORTHO05D003010 9.3e-11 70.9 74 47.3
BcaC01g01004 Brassica carinata HOM05D000113 ORTHO05D003010 1.2e-10 70.5 71 47.9
C03p87170 Brassica napus HOM05D000113 ORTHO05D003010 1.2e-10 70.5 71 47.9
Peaxi162Scf01000g00123 Petunia axillaris HOM05D000113 ORTHO05D003010 1.2e-10 70.5 40 80.0
Cfa005388 Carpinus fangiana HOM05D000113 ORTHO05D003010 1.0e-09 67.4 45 66.7
Zm00001eb082090 Zea mays HOM05D000113 ORTHO05D013364 1.0e-09 67.4 108 39.8
Peaxi162Scf02085g00002 Petunia axillaris HOM05D000113 ORTHO05D003010 1.3e-09 67.0 40 75.0
RcHm_v2.0_Chr5g0081521 Rosa chinensis HOM05D000113 ORTHO05D003010 2.3e-09 66.2 73 52.1
CARHR262110 Cardamine hirsuta HOM05D000113 ORTHO05D013364 3.0e-09 65.9 45 62.2
FAN11G3170 Fragaria x ananassa HOM05D000113 ORTHO05D003010 6.7e-09 64.7 53 64.2
Lsat_1_v5_gn_7_2860 Lactuca sativa HOM05D000113 ORTHO05D013364 1.1e-08 63.9 73 43.8
FAN16G1116 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.5e-08 63.5 76 44.7
FAN21G1970 Fragaria x ananassa HOM05D000113 ORTHO05D003010 1.5e-08 63.5 53 62.3
FvH4_3g44820 Fragaria vesca HOM05D000113 ORTHO05D003010 1.9e-08 63.2 53 62.3
BraA08t33757Z Brassica rapa HOM05D000113 ORTHO05D003010 2.5e-08 62.8 45 57.8
DCAR_012678 Daucus carota HOM05D000113 ORTHO05D003010 4.3e-08 62.0 103 38.8
Manes.04G050000 Manihot esculenta HOM05D000113 ORTHO05D003010 4.3e-08 62.0 39 66.7
Zm00001eb236680 Zea mays HOM05D000113 ORTHO05D003010 4.3e-08 62.0 73 45.2
Ciclev10007378m.g Citrus clementina HOM05D000113 ORTHO05D003010 5.6e-08 61.6 71 45.1
PGR102G3075 Punica granatum HOM05D000113 ORTHO05D003010 5.6e-08 61.6 67 53.7
FAN25G2665 Fragaria x ananassa HOM05D000113 ORTHO05D013364 7.4e-08 61.2 53 60.4
CBR_g6734 Chara braunii HOM05D000113 ORTHO05D003010 2.8e-07 59.3 78 37.2
Prupe.1G082300 Prunus persica HOM05D000113 ORTHO05D003010 2.8e-07 59.3 93 37.6
MD16G1254900 Malus domestica HOM05D000113 ORTHO05D003010 4.8e-07 58.5 40 65.0
SMO117G0308 Selaginella moellendorffii HOM05D000113 ORTHO05D013364 6.2e-07 58.2 45 60.0
DCAR_024712 Daucus carota HOM05D000113 ORTHO05D003010 8.1e-07 57.8 65 46.2
Thhalv10028287m.g Eutrema salsugineum HOM05D000113 ORTHO05D003010 1.8e-06 56.6 42 59.5
unitig_21.g20053 Utricularia gibba HOM05D000113 ORTHO05D013364 1.8e-06 56.6 83 41.0
SEGI_20308 Sequoiadendron giganteum HOM05D000113 ORTHO05D003010 2.4e-06 56.2 68 42.6


User provided reference genes

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