Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0780 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.6e-122 441.4 253 100.0
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.2e-87 326.2 203 94.6
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-85 318.9 194 95.9
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.4e-85 318.9 194 95.9
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 6.5e-84 314.7 203 91.1
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-83 313.9 203 91.1
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.3e-79 300.4 203 90.6
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 6.1e-58 228.4 205 70.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 6.2e-26 122.1 213 50.2
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 4.0e-25 119.4 217 48.4
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 2.1e-21 107.1 214 45.3
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.3e-20 103.6 226 41.2
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 2.3e-20 103.6 229 43.2
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.3e-20 103.6 226 41.2
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 6.6e-20 102.1 215 44.7
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 6.6e-20 102.1 215 44.7
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-19 101.3 216 45.8
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 1.9e-19 100.5 217 45.2
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.3e-19 99.8 213 44.6
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 9.5e-19 98.2 217 40.6
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 1.6e-18 97.4 230 43.5
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 2.8e-18 96.7 215 42.8
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 4.7e-18 95.9 221 43.0
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 6.2e-18 95.5 211 42.7
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 8.9e-17 91.7 209 42.1
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.2e-16 91.3 215 42.8
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 1.5e-16 90.9 229 41.5
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 3.4e-16 89.7 224 38.4
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 3.4e-16 89.7 208 37.0
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 4.4e-16 89.4 227 41.4
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 4.4e-16 89.4 203 42.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 7.6e-16 88.6 212 42.5
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 1.7e-15 87.4 217 40.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 2.2e-15 87.0 210 38.1
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 2.9e-15 86.7 209 42.6
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 2.9e-15 86.7 209 39.2
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.8e-15 86.3 230 41.3
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 3.8e-15 86.3 230 41.3
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 4.9e-15 85.9 208 40.9
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 4.9e-15 85.9 207 41.5
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 4.9e-15 85.9 211 41.7
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 8.4e-15 85.1 231 37.2
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.4e-14 84.3 221 38.9
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.4e-14 84.3 178 39.3
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 2.4e-14 83.6 226 38.5
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 5.4e-14 82.4 209 38.3
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 5.4e-14 82.4 208 39.9
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 7.1e-14 82.0 212 40.6
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 1.2e-13 81.3 207 41.1
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 1.6e-13 80.9 204 39.2
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.6e-13 80.9 210 38.6
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 6.0e-13 79.0 211 40.3
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.3e-12 77.8 205 39.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 1.3e-12 77.8 213 39.9
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.3e-12 77.8 202 39.6
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 1.7e-12 77.4 210 39.0
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 1.7e-12 77.4 211 37.0
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 2.3e-12 77.0 207 37.7
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 2.3e-12 77.0 211 40.3
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 3.0e-12 76.6 224 38.4
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 3.9e-12 76.3 211 39.8
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 5.1e-12 75.9 217 33.2
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 5.1e-12 75.9 212 38.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 6.6e-12 75.5 206 39.8
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 6.6e-12 75.5 208 39.9
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.7e-12 75.1 212 40.6
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.5e-11 74.3 208 38.0
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 1.5e-11 74.3 211 40.3
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.9e-11 73.9 212 36.8
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 1.9e-11 73.9 215 37.2
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.5e-11 73.6 243 39.1
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 2.5e-11 73.6 223 38.6
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 2.5e-11 73.6 168 37.5
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 4.3e-11 72.8 211 41.7
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 4.3e-11 72.8 207 39.6
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 7.3e-11 72.0 237 40.9
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 7.3e-11 72.0 221 36.7
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 9.6e-11 71.6 206 35.9
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 1.2e-10 71.2 214 35.0
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.6e-10 70.9 206 40.8
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 2.1e-10 70.5 213 39.9
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 2.1e-10 70.5 208 38.0
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 4.7e-10 69.3 223 38.6
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 6.2e-10 68.9 223 38.6
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 8.1e-10 68.6 207 39.1
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 1.4e-09 67.8 217 38.2
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 2.4e-09 67.0 204 38.7
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 3.1e-09 66.6 227 38.3
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 5.2e-09 65.9 170 33.5
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 5.2e-09 65.9 234 29.1
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 6.9e-09 65.5 207 37.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 9.0e-09 65.1 204 29.4
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 9.0e-09 65.1 207 37.7
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 9.0e-09 65.1 164 34.8
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 1.2e-08 64.7 212 41.5
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 1.5e-08 64.3 206 36.4
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.5e-08 64.3 192 38.0
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.5e-08 64.3 181 36.5
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.5e-08 64.3 188 35.1
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 2.6e-08 63.5 209 35.4
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 3.4e-08 63.2 184 39.1
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.4e-08 63.2 189 38.6
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 5.8e-08 62.4 222 36.0
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 9.9e-08 61.6 195 36.9
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.3e-07 61.2 234 33.8
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.7e-07 60.8 217 36.4
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-07 60.5 225 38.2
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 2.9e-07 60.1 224 31.2
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 3.8e-07 59.7 209 35.4
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 3.8e-07 59.7 209 35.4
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 3.8e-07 59.7 210 35.2
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 4.9e-07 59.3 207 34.8
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 8.4e-07 58.5 164 35.4
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 8.4e-07 58.5 91 38.5
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 1.4e-06 57.8 219 33.3
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.9e-06 57.4 225 37.8
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 2.4e-06 57.0 77 46.8
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 2.4e-06 57.0 78 43.6
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.2e-06 56.6 128 36.7
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 3.2e-06 56.6 184 31.0
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 4.2e-06 56.2 203 29.1
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 7.1e-06 55.5 206 34.0
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 7.1e-06 55.5 165 33.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 7.1e-06 55.5 225 37.3
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 7.1e-06 55.5 178 37.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 9.3e-06 55.1 214 34.6
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 9.3e-06 55.1 153 44.4
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 9.3e-06 55.1 213 37.6


User provided reference genes

Program Settings