Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.9e-149 530.8 257 100.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.8e-140 501.5 250 98.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.4e-137 493.0 250 96.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.3e-136 488.0 253 94.5
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.7e-135 486.1 245 96.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.5e-133 478.0 247 94.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-131 473.4 247 92.7
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.2e-123 445.3 247 86.2
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.2e-86 320.9 241 65.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.7e-85 319.3 245 64.9
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.0e-84 317.4 245 63.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.7e-84 316.6 245 62.4
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.0e-84 315.8 242 65.3
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 8.6e-84 314.3 245 61.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.6e-84 314.3 254 60.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.6e-84 314.3 254 60.6
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.5e-83 313.5 238 62.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.9e-83 313.2 244 64.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.5e-83 312.8 239 64.4
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.3e-83 312.0 239 64.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 4.3e-83 312.0 236 61.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 7.3e-83 311.2 248 61.3
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 9.5e-83 310.8 249 59.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-82 310.1 245 63.7
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-82 310.1 244 63.5
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.6e-82 308.9 239 63.6
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.7e-82 308.5 242 62.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.2e-82 308.1 247 61.9
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.8e-81 306.6 247 62.3
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.3e-81 306.2 234 64.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 4.0e-81 305.4 244 62.3
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 5.2e-81 305.1 249 60.6
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 5.2e-81 305.1 239 62.3
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.9e-81 304.3 242 62.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.2e-80 303.9 239 62.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.5e-80 303.5 233 63.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.6e-80 302.8 242 62.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 3.4e-80 302.4 235 65.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.9e-79 299.3 243 61.3
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 6.4e-79 298.1 239 61.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.1e-78 297.4 240 60.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-78 297.4 246 59.8
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.4e-78 297.0 246 59.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.4e-78 295.0 246 58.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.1e-78 294.7 246 59.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.5e-77 292.4 248 60.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.7e-76 290.0 247 59.9
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-75 286.2 246 58.5
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.3e-75 285.8 240 56.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 5.6e-75 285.0 239 57.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.2e-74 283.9 246 60.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.6e-74 283.5 240 58.8
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-74 283.5 248 56.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.6e-74 282.3 233 58.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.7e-74 282.0 250 54.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.1e-74 281.2 233 58.8
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.3e-73 279.6 238 56.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.3e-73 279.6 243 58.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.3e-73 279.6 245 55.5
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 3.1e-73 279.3 242 57.9
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.1e-73 279.3 246 56.9
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.1e-73 279.3 233 59.2
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 5.2e-73 278.5 240 59.6
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.9e-73 277.7 243 58.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 8.9e-73 277.7 233 58.8
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.6e-72 276.2 238 55.9
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.4e-72 275.8 228 61.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.4e-72 275.4 237 57.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.4e-72 275.4 233 58.8
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.8e-72 275.0 238 58.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 7.6e-72 274.6 233 57.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.3e-71 273.9 242 57.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.3e-71 273.9 242 57.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.9e-71 271.9 253 56.5
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.9e-71 271.9 241 56.0
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-70 270.4 246 55.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.9e-70 270.0 235 56.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 4.1e-70 268.9 261 54.4
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 7.1e-70 268.1 263 53.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.2e-70 267.7 235 56.2
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.2e-70 267.7 235 56.2
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 9.2e-70 267.7 241 56.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-69 266.5 201 61.2
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-69 266.2 237 57.8
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-69 266.2 237 57.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.7e-69 266.2 245 55.5
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 6.0e-69 265.0 253 56.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.0e-68 264.2 240 57.1
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.1e-68 261.9 241 54.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 8.6e-68 261.2 237 54.4
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 8.6e-68 261.2 242 51.7
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.5e-67 260.4 237 53.6
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-67 260.4 243 54.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.9e-67 260.0 237 55.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.5e-67 259.6 237 56.1
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.3e-67 258.8 242 52.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.3e-67 258.8 235 54.5
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.6e-67 258.5 239 53.6
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.6e-67 258.5 237 53.6
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.6e-67 257.7 237 56.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.2e-66 257.3 233 54.9
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.6e-66 256.9 237 54.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.6e-66 256.9 241 54.8
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.1e-66 256.5 243 55.6
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.1e-66 256.5 238 54.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.8e-66 256.1 241 55.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.6e-66 255.8 237 54.9
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.1e-65 254.2 237 55.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.1e-65 254.2 248 52.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.4e-65 253.8 250 55.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.8e-65 253.4 233 54.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.8e-65 253.4 243 56.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.4e-65 253.1 243 52.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.4e-65 253.1 245 52.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.4e-65 253.1 243 54.3
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.1e-65 252.7 237 53.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.0e-65 252.3 240 55.0
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 5.2e-65 251.9 235 53.6
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 5.2e-65 251.9 235 53.6
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.9e-65 251.1 246 53.7
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.2e-64 250.8 237 54.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.2e-64 250.8 237 54.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.6e-64 249.6 237 54.9
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 5.8e-64 248.4 240 52.5
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.6e-64 248.1 208 59.6
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.3e-63 247.3 241 53.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.7e-63 246.9 238 51.3
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-63 245.7 216 56.9
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.9e-63 245.4 237 51.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.4e-63 245.0 241 52.3
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.2e-62 242.7 216 56.5
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 5.4e-62 241.9 240 50.8
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.7e-61 239.6 223 54.7
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.7e-61 239.6 241 53.9
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 4.6e-61 238.8 206 58.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.6e-61 238.8 208 57.7
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.7e-60 236.9 233 53.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.9e-59 233.4 230 49.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 9.6e-59 231.1 235 51.5
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.6e-58 230.3 235 51.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-58 229.9 225 52.0
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 6.2e-58 228.4 259 48.6
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-57 227.6 250 48.8
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.4e-57 227.3 257 47.9
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.4e-57 226.5 237 51.9
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-56 223.8 209 52.6
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 9.3e-54 214.5 245 48.6
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 7.9e-53 211.5 229 47.6
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 6.7e-52 208.4 223 52.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.3e-50 204.1 243 46.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 6.9e-49 198.4 237 44.7
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.3e-47 194.1 154 61.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.7e-47 193.7 267 41.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.9e-47 193.0 174 56.3
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.3e-46 188.0 163 54.6
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 9.3e-46 188.0 261 40.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 2.7e-45 186.4 185 53.0
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.1e-44 182.2 244 42.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.1e-43 181.0 165 51.5
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.8e-42 176.4 155 55.5
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 7.4e-35 151.8 207 43.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.3e-34 151.0 126 57.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.9e-33 145.2 199 44.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.3e-30 134.8 190 39.5
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.8e-28 130.6 100 62.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 6.7e-28 128.6 145 46.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.7e-27 125.6 107 56.1
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 9.7e-27 124.8 119 53.8
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 9.7e-27 124.8 116 52.6
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.3e-23 114.4 142 46.5
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-22 111.3 117 49.6
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-22 110.2 93 55.9
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 6.1e-21 105.5 165 35.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.8e-17 94.0 89 55.1
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.5e-16 90.9 189 29.6
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 7.7e-16 88.6 83 49.4
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 2.5e-14 83.6 186 30.1
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 7.2e-14 82.0 80 51.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 7.2e-14 82.0 132 36.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.6e-13 79.7 96 44.8
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.7e-13 79.3 72 54.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.3e-10 71.2 168 28.6
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 7.0e-09 65.5 59 54.2


User provided reference genes

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