Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.3e-107 393.7 292 100.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.7e-72 276.9 298 68.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.5e-71 273.9 291 69.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.5e-71 271.2 304 68.8
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.1e-70 270.0 296 67.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 8.0e-70 268.1 292 69.2
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.0e-69 267.7 299 67.9
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.0e-69 265.8 293 67.9
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 8.9e-69 264.6 299 67.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.2e-68 264.2 291 68.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 7.5e-68 261.5 291 67.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.7e-67 260.4 293 66.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.7e-67 260.4 290 64.8
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.7e-67 260.4 268 74.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.1e-66 255.8 295 65.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 6.0e-65 251.9 306 63.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 7.8e-65 251.5 303 60.1
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.0e-64 251.1 311 69.1
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.7e-64 250.4 270 58.5
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.0e-64 249.6 251 66.1
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.0e-64 249.6 302 60.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.9e-64 249.2 300 67.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 8.6e-64 248.1 216 70.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.1e-63 247.7 296 64.5
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.9e-63 246.9 292 64.0
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.3e-63 246.1 301 60.8
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.6e-63 245.4 271 69.7
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.6e-62 243.8 246 63.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.8e-62 243.0 259 61.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.6e-62 242.7 304 61.5
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.2e-62 241.9 159 81.8
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.1e-62 241.5 158 78.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-61 241.1 295 61.0
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.3e-61 240.0 294 65.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.3e-61 240.0 158 80.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.1e-61 239.6 293 62.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 4.0e-61 239.2 202 67.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.0e-61 239.2 157 80.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.0e-61 239.2 290 65.5
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.2e-61 238.8 242 68.2
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.2e-61 238.8 158 79.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 6.8e-61 238.4 159 78.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.8e-61 238.4 291 62.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 8.9e-61 238.0 159 78.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 8.9e-61 238.0 301 64.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.9e-61 238.0 241 68.0
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.2e-60 237.7 159 80.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.2e-60 237.7 217 69.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.0e-60 236.9 159 78.0
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-60 236.9 159 77.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.6e-60 236.5 158 77.2
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.4e-60 236.1 241 63.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.4e-60 236.1 293 67.9
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.4e-60 236.1 299 64.2
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 4.4e-60 235.7 159 77.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 4.4e-60 235.7 159 77.4
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.4e-60 235.7 272 64.3
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.4e-60 235.7 196 67.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.4e-60 235.7 196 67.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.8e-60 235.3 158 77.2
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.5e-60 235.0 159 77.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 9.8e-60 234.6 159 75.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-59 234.2 294 65.3
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-59 234.2 294 65.3
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-59 234.2 159 76.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.3e-59 234.2 158 77.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.7e-59 233.8 273 62.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.7e-59 233.8 230 64.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.9e-59 233.0 200 66.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-59 233.0 202 67.3
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.9e-59 233.0 271 68.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.9e-59 232.3 241 68.9
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.9e-59 232.3 158 75.9
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.9e-59 232.3 300 62.3
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.4e-59 231.9 157 77.7
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 6.4e-59 231.9 158 77.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-58 231.1 196 66.3
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.1e-58 231.1 292 69.2
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-58 230.7 201 66.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-58 230.7 201 66.7
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.4e-58 230.7 298 68.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.4e-58 230.7 158 75.3
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-58 230.3 159 75.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-58 230.3 159 75.5
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-58 229.9 196 64.8
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.4e-58 229.9 158 75.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.4e-58 229.9 284 58.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 2.4e-58 229.9 284 59.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.4e-58 229.9 160 75.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.1e-58 229.2 158 86.1
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.4e-58 228.8 288 66.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 7.1e-58 228.4 250 65.6
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 9.2e-58 228.0 158 75.9
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.2e-58 228.0 298 63.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.6e-57 227.3 290 62.1
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-57 226.9 202 65.3
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.5e-57 226.1 250 63.6
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.5e-57 226.1 202 65.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.5e-57 226.1 303 58.4
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 6.0e-57 225.3 158 84.2
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 7.8e-57 224.9 157 75.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.0e-56 224.6 160 73.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.7e-56 223.8 298 65.1
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.7e-56 223.8 152 77.6
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.3e-56 223.4 156 75.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.3e-56 223.4 159 78.6
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.3e-56 223.4 297 65.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.0e-56 223.0 155 75.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.0e-56 223.0 155 75.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.9e-56 222.6 155 74.2
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.1e-56 222.2 196 68.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.1e-56 222.2 295 56.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.1e-56 222.2 159 77.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 5.1e-56 222.2 292 60.6
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.6e-56 221.9 292 67.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 8.6e-56 221.5 158 74.7
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.1e-55 221.1 292 62.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.1e-55 221.1 294 71.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.5e-55 219.9 190 64.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-55 219.2 304 54.9
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.2e-54 217.6 159 79.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.1e-54 216.9 304 58.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-54 216.9 304 58.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.3e-53 213.4 266 61.3
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.1e-53 213.0 252 57.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 6.8e-53 211.8 148 75.7
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 6.8e-53 211.8 273 62.6
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.0e-52 210.3 160 77.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.6e-52 208.4 291 58.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.7e-51 207.2 282 59.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-50 204.5 149 71.8
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 5.1e-48 195.7 270 54.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 5.1e-48 195.7 270 54.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 8.6e-48 194.9 219 63.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.5e-47 194.1 143 71.3
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.1e-46 190.3 260 62.3
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.1e-46 188.3 161 72.7
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.1e-45 188.0 233 51.5
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 9.9e-44 181.4 134 73.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.4e-42 175.6 161 58.4
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.5e-41 172.9 128 69.5
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 6.0e-41 172.2 129 72.9
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.1e-39 167.9 159 61.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.5e-39 166.8 170 60.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.6e-38 162.9 160 65.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.4e-37 161.0 159 59.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 5.3e-37 159.1 159 56.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-36 157.5 131 63.4
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.2e-34 149.8 96 79.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 4.6e-33 146.0 220 48.2
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.4e-28 129.8 94 71.3
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-27 127.5 286 46.9
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-27 127.5 286 46.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.2e-27 127.1 201 49.3
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.4e-26 123.6 298 45.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 2.4e-26 123.6 145 49.7
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-24 117.1 205 44.4
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.9e-19 99.4 60 83.3
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.3e-15 86.7 147 42.9
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-14 84.3 45 88.9
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 6.3e-14 82.4 107 50.5
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.2e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.9e-12 75.9 42 83.3


User provided reference genes

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