Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 8.7e-44 179.9 88 100.0
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 5.6e-43 177.2 88 98.9
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 9.6e-43 176.4 88 97.7
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 9.6e-43 176.4 88 97.7
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 9.6e-43 176.4 88 97.7
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.3e-42 176.0 88 97.7
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.6e-42 175.6 88 96.6
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.6e-42 175.6 88 96.6
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.6e-42 175.6 87 97.7
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.6e-42 175.6 87 97.7
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.6e-42 175.6 88 96.6
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.6e-42 175.6 88 96.6
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.1e-42 175.3 87 98.9
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.1e-42 175.3 87 98.9
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 2.1e-42 175.3 87 98.9
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 2.1e-42 175.3 88 96.6
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 2.8e-42 174.9 88 96.6
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 2.8e-42 174.9 88 96.6
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 2.8e-42 174.9 88 96.6
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 2.8e-42 174.9 88 96.6
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 3.6e-42 174.5 88 96.6
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 3.6e-42 174.5 88 96.6
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 3.6e-42 174.5 85 98.8
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 4.8e-42 174.1 87 97.7
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 4.8e-42 174.1 87 97.7
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 4.8e-42 174.1 88 96.6
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 4.8e-42 174.1 87 97.7
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 96.6
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 96.6
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 96.6
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 6.2e-42 173.7 88 96.6
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 8.1e-42 173.3 87 96.6
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 8.1e-42 173.3 88 94.3
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.1e-42 173.3 88 94.3
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.1e-42 173.3 88 94.3
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.1e-42 173.3 88 94.3
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 8.1e-42 173.3 88 95.5
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 1.1e-41 172.9 88 95.5
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 1.1e-41 172.9 87 96.6
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 95.5
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 1.4e-41 172.6 87 96.6
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 88 94.3
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 94.3
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 95.5
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 94.3
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 95.5
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 1.8e-41 172.2 88 95.5
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 2.4e-41 171.8 87 95.4
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 2.4e-41 171.8 86 96.5
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 3.1e-41 171.4 87 95.4
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 3.1e-41 171.4 89 96.6
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 3.1e-41 171.4 89 96.6
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 3.1e-41 171.4 89 96.6
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 4.0e-41 171.0 88 93.2
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 4.0e-41 171.0 84 97.6
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 96.6
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 96.6
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 4.0e-41 171.0 87 96.6
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.0e-41 171.0 85 95.3
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 5.3e-41 170.6 85 96.5
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 6.9e-41 170.2 83 98.8
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 6.9e-41 170.2 87 94.3
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 9.0e-41 169.9 87 93.1
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.2e-40 169.5 87 93.1
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 1.5e-40 169.1 85 94.1
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 2.0e-40 168.7 85 92.9
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 5.8e-40 167.2 85 92.9
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 7.6e-40 166.8 85 92.9
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 1.3e-39 166.0 85 92.9
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.7e-39 165.6 83 94.0
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 2.2e-39 165.2 88 88.6
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 2.9e-39 164.9 101 83.2
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 2.9e-39 164.9 83 94.0
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 4.9e-39 164.1 83 92.8
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 6.4e-39 163.7 82 96.3
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 6.4e-39 163.7 82 96.3
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 6.4e-39 163.7 82 96.3
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 1.4e-38 162.5 85 90.6
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 1.9e-38 162.2 81 95.1
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 2.1e-37 158.7 84 88.1
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 2.7e-37 158.3 86 88.4
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 2.7e-37 158.3 78 98.7
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 4.6e-37 157.5 84 89.3
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 6.0e-37 157.1 84 88.1
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 1.3e-36 156.0 77 97.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.3e-36 156.0 89 88.8
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 1.3e-36 156.0 83 94.0
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 1.8e-36 155.6 85 83.5
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 2.3e-36 155.2 77 97.4
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 2.3e-36 155.2 77 97.4
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 3.9e-36 154.5 82 87.8
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 5.1e-36 154.1 77 96.1
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 5.1e-36 154.1 77 96.1
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 1.1e-35 152.9 77 96.1
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 1.5e-32 142.5 82 74.4
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 5.5e-30 134.0 85 80.0
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 4.6e-29 131.0 108 66.7
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 3.9e-28 127.9 87 79.3
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 3.3e-27 124.8 63 96.8
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.6e-26 122.5 59 98.3
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 6.5e-23 110.5 77 61.0
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 8.4e-23 110.2 63 87.3
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.4e-22 109.4 74 77.0
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 1.2e-21 106.3 51 98.0
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 7.9e-21 103.6 49 100.0
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 7.9e-21 103.6 53 92.5
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 7.9e-21 103.6 51 96.1
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 1.0e-20 103.2 53 94.3
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 3.0e-20 101.7 52 92.3
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 1.9e-19 99.0 48 95.8
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 2.1e-13 79.0 88 53.4
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 3.1e-09 65.1 34 88.2
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 6.9e-09 63.9 29 96.6
Eucgr.H03686 Eucalyptus grandis HOM05D004922 ORTHO05D193424 1.4e-06 56.2 66 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 4.2e-06 54.7 79 38.0
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 7.2e-06 53.9 77 39.0
arahy.Tifrunner.gnm1.ann1.CLHV51 Arachis hypogaea HOM05D004922 ORTHO05D085406 7.2e-06 53.9 78 42.3
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 7.2e-06 53.9 77 37.7
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 9.4e-06 53.5 77 36.4
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 9.4e-06 53.5 78 35.9
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 9.4e-06 53.5 77 39.0
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 9.4e-06 53.5 77 39.0


User provided reference genes

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