Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 4.2e-197 691.4 412 100.0
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 4.0e-139 498.8 294 80.6
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 3.3e-138 495.7 294 81.0
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 1.7e-137 493.4 293 79.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 8.2e-137 491.1 293 79.9
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 7.0e-136 488.0 294 80.3
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 7.0e-136 488.0 294 80.3
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 2.0e-135 486.5 293 78.5
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 2.6e-135 486.1 294 77.9
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 3.5e-135 485.7 293 78.2
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 4.5e-135 485.3 296 79.4
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 5.9e-135 485.0 294 78.2
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.7e-134 483.4 294 78.6
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.9e-134 482.6 290 77.9
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 3.8e-134 482.3 293 78.5
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 6.5e-134 481.5 294 79.6
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 6.5e-134 481.5 290 78.3
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 6.5e-134 481.5 293 79.2
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 8.5e-134 481.1 289 78.5
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.9e-133 479.9 290 80.0
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.5e-133 479.6 294 77.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 3.2e-133 479.2 294 77.6
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 5.5e-133 478.4 294 78.9
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 9.4e-133 477.6 294 77.9
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 1.6e-132 476.9 290 75.9
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 2.1e-132 476.5 290 77.2
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 3.6e-132 475.7 290 77.6
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 3.6e-132 475.7 290 77.6
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 3.6e-132 475.7 293 77.8
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 3.6e-132 475.7 293 78.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.0e-131 474.2 319 71.5
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.0e-131 474.2 295 76.3
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 1.4e-131 473.8 296 77.0
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.8e-131 473.4 287 77.7
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 1.8e-131 473.4 293 77.5
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 2.3e-131 473.0 290 76.6
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.3e-131 473.0 320 73.1
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.0e-131 472.6 290 77.9
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 4.0e-131 472.2 290 77.2
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.5e-130 470.3 290 77.2
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.0e-130 469.9 295 76.3
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.0e-130 469.9 294 76.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.4e-130 469.2 420 60.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 4.4e-130 468.8 287 76.3
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.3e-129 467.2 344 68.0
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.2e-129 466.5 293 76.1
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.1e-128 464.2 313 72.2
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 3.1e-128 462.6 290 74.8
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 5.4e-128 461.8 295 74.2
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.0e-128 461.5 420 58.8
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.0e-127 459.9 290 75.2
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 1.3e-126 457.2 294 75.5
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 2.2e-126 456.4 281 76.9
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 2.9e-126 456.1 290 73.8
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 6.5e-126 454.9 420 58.3
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 1.1e-125 454.1 344 66.3
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.5e-125 453.8 289 76.8
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.9e-125 453.4 290 75.5
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.9e-125 453.4 299 74.9
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.9e-125 453.4 322 68.9
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 4.2e-125 452.2 267 78.7
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.0e-123 447.6 289 75.1
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.4e-123 447.2 324 67.9
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.8e-123 446.8 331 66.2
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 3.0e-123 446.0 278 73.7
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 2.2e-121 439.9 332 66.3
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 2.8e-121 439.5 325 66.5
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 1.8e-120 436.8 291 72.5
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 9.1e-120 434.5 294 72.1
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 5.9e-119 431.8 260 79.2
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.0e-118 431.0 321 66.4
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.3e-118 430.6 291 71.5
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 8.6e-118 427.9 342 63.5
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 1.5e-117 427.2 260 77.3
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.6e-114 416.4 426 59.4
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.7e-114 415.2 293 66.6
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.7e-113 413.7 291 73.5
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 2.9e-113 412.9 500 51.4
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 3.7e-113 412.5 260 76.9
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 5.4e-112 408.7 245 79.2
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 3.9e-110 402.5 283 68.9
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 3.9e-110 402.5 322 64.9
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.8e-108 396.4 330 62.4
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 6.2e-108 395.2 282 67.4
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.3e-107 393.3 500 51.4
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 5.8e-106 388.7 280 67.5
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 9.8e-106 387.9 344 59.9
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.3e-105 387.5 246 77.2
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.3e-105 387.5 321 59.8
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.7e-105 387.1 316 61.4
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.4e-104 383.3 291 65.3
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 3.2e-104 382.9 325 61.2
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 5.4e-104 382.1 297 64.3
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.7e-100 369.0 222 78.4
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.2e-99 365.5 222 77.0
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 6.8e-99 365.2 221 79.2
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.7e-97 359.4 217 79.3
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.2e-95 354.4 255 68.2
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 3.5e-95 352.8 216 78.2
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 4.7e-92 342.4 290 57.9
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 9.2e-88 328.2 292 55.8
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 9.2e-88 328.2 324 53.7
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.2e-84 317.8 277 55.6
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 1.2e-84 317.8 251 64.9
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.6e-84 317.4 319 60.5
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.9e-77 293.9 288 50.3
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 5.3e-75 285.8 175 80.0
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.6e-68 264.2 300 47.3
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 2.1e-63 247.3 226 50.9
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 3.0e-62 243.4 144 80.6
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.3e-57 228.0 116 96.6
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 3.5e-55 219.9 271 43.5
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 7.6e-50 202.2 287 45.6
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 2.2e-49 200.7 113 83.2
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.7e-47 193.7 121 75.2
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.3e-46 191.4 328 32.3
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 4.1e-35 153.3 103 68.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.5e-34 149.8 101 73.3
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.9e-32 144.4 91 70.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 6.1e-31 139.4 83 75.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 6.1e-31 139.4 77 80.5
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 3.3e-29 133.7 101 65.3
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.2e-24 117.1 102 59.8
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.5e-24 116.3 66 81.8
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.6e-23 113.6 74 73.0
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 1.9e-16 91.3 98 50.0
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 9.4e-16 89.0 129 44.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 9.4e-16 89.0 79 55.7
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 1.8e-14 84.7 54 68.5
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 4.2e-08 63.5 206 29.6
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 7.2e-08 62.8 287 23.7
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 8.0e-07 59.3 88 35.2
Cre08.g376500 Chlamydomonas reinhardtii HOM05D016293 ORTHO05D018978 6.8e-06 56.2 71 40.8


User provided reference genes

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