Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 8.0e-291 1003.0 512 100.0
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 5.7e-228 794.3 495 81.0
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 1.8e-221 772.7 494 77.7
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 3.7e-219 765.0 494 77.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 6.3e-219 764.2 494 76.7
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 4.1e-218 761.5 494 77.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-217 760.0 494 76.7
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-217 760.0 494 76.7
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 1.5e-217 759.6 494 76.7
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 3.4e-217 758.4 494 76.5
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 2.5e-215 752.3 494 74.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.2e-215 751.9 494 76.9
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.9e-213 745.0 494 76.7
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.1e-212 743.4 494 76.1
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 2.0e-212 742.7 494 76.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 5.7e-212 741.1 494 74.7
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 7.4e-212 740.7 494 74.7
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 9.7e-212 740.3 496 75.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 9.7e-212 740.3 494 74.3
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.7e-211 738.4 494 74.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 1.1e-210 736.9 494 74.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 1.1e-210 736.9 495 75.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.1e-210 735.3 503 73.0
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 1.2e-209 733.4 494 74.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 3.4e-209 731.9 494 73.5
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 5.9e-209 731.1 495 74.9
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 7.7e-209 730.7 498 73.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 6.5e-208 727.6 494 73.7
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 1.4e-207 726.5 494 73.3
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.9e-207 726.1 494 74.3
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 3.2e-207 725.3 495 73.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 3.2e-207 725.3 494 73.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.0e-205 720.3 494 73.3
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 2.3e-205 719.2 494 73.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 3.9e-205 718.4 494 73.1
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 8.8e-205 717.2 495 73.1
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 2.0e-204 716.1 494 72.7
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 4.4e-204 714.9 494 72.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 7.4e-204 714.1 494 72.3
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.8e-203 711.4 494 72.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 1.8e-202 709.5 494 71.1
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 2.4e-202 709.1 495 72.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 2.4e-202 709.1 494 71.1
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.1e-202 708.4 494 72.1
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 7.0e-202 707.6 495 72.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 3.5e-201 705.3 495 72.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.9e-201 704.5 494 71.5
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 1.0e-200 703.7 496 71.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 2.2e-200 702.6 495 71.7
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.9e-200 702.2 495 71.5
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.1e-199 700.3 495 70.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 1.9e-199 699.5 483 73.3
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 7.2e-199 697.6 494 71.9
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 2.7e-198 695.7 494 71.1
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 4.7e-198 694.9 520 68.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 4.7e-198 694.9 494 70.9
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 8.0e-198 694.1 494 70.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 4.0e-197 691.8 494 68.8
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 4.0e-197 691.8 494 68.6
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 6.7e-197 691.0 494 72.1
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 8.8e-197 690.6 481 73.2
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 8.8e-197 690.6 495 70.7
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.5e-196 689.9 494 71.5
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.6e-196 689.1 494 71.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 3.3e-196 688.7 494 70.4
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 5.7e-196 688.0 494 70.6
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 9.7e-196 687.2 494 71.9
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.7e-195 686.4 494 70.6
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 6.3e-195 684.5 494 67.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 1.8e-194 682.9 495 70.1
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 4.1e-194 681.8 494 67.8
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.6e-193 679.9 495 69.9
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.0e-193 679.5 576 62.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 2.7e-193 679.1 494 67.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 2.7e-193 679.1 494 68.2
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.0e-192 677.2 494 67.4
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.0e-192 674.9 553 64.7
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 5.0e-192 674.9 502 67.9
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 8.5e-192 674.1 494 67.2
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 8.5e-192 674.1 494 67.2
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.1e-191 673.7 494 67.6
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 4.2e-191 671.8 494 67.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 4.2e-191 671.8 494 70.0
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 7.2e-191 671.0 494 67.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.0e-189 665.6 503 65.0
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 7.5e-188 661.0 496 68.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.3e-184 650.2 496 67.9
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 2.5e-183 646.0 511 65.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 9.4e-183 644.0 495 64.8
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 8.0e-182 641.0 494 68.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 8.0e-182 641.0 494 67.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 4.4e-180 635.2 494 64.0
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 3.1e-178 629.0 495 63.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 7.7e-177 624.4 508 61.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 1.5e-175 620.2 494 65.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 2.5e-175 619.4 494 64.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.1e-174 616.3 527 63.2
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 4.0e-173 612.1 452 68.4
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 2.0e-172 609.8 520 62.5
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 1.8e-170 603.2 450 68.2
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.4e-170 602.8 494 60.5
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.6e-169 600.1 494 63.2
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.5e-159 566.2 410 69.3
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.4e-149 533.9 496 58.3
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.3e-143 512.3 510 52.5
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.2e-142 510.8 501 52.9
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 4.3e-135 485.7 509 50.1
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-130 470.7 378 62.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.4e-125 453.4 354 64.4
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 8.1e-118 428.3 410 55.4
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 5.3e-109 399.1 502 40.6
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.4e-106 391.0 588 41.3
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 7.2e-98 362.1 457 46.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.3e-91 341.3 389 50.9
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 6.8e-64 249.2 130 88.5
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.4e-48 198.4 140 67.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.0e-47 194.5 374 31.3
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 6.2e-33 146.4 285 29.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 7.1e-21 106.3 469 23.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.1e-16 90.9 42 90.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.0e-15 88.2 131 37.4
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.6e-15 86.3 46 84.8
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.7e-09 67.4 63 58.7
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.2e-06 58.2 63 55.6


User provided reference genes

Program Settings