Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g02103 Beta vulgaris HOM05D005387 ORTHO05D006711 5.5e-242 840.5 410 100.0
EL10Ac1g02088 Beta vulgaris HOM05D005387 ORTHO05D006711 1.9e-125 453.4 348 69.5
EL10Ac6g13926 Beta vulgaris HOM05D005387 ORTHO05D006711 4.6e-63 246.1 130 93.8
Hund03003 Selenicereus undatus HOM05D005387 ORTHO05D006711 1.5e-58 231.1 129 87.6
AUR62025818 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.2e-57 227.3 129 86.0
AUR62034034 Chenopodium quinoa HOM05D005387 ORTHO05D006711 3.8e-57 226.5 129 86.0
AUR62044301 Chenopodium quinoa HOM05D005387 ORTHO05D006711 3.8e-57 226.5 129 86.0
AUR62026893 Chenopodium quinoa HOM05D005387 ORTHO05D006711 4.2e-56 223.0 129 83.7
Dinv34746 Davidia involucrata HOM05D005387 ORTHO05D006711 4.6e-55 219.5 129 82.9
Actinidia09142 Actinidia chinensis HOM05D005387 ORTHO05D006711 1.3e-54 218.0 129 81.4
vmacro02566 Vaccinium macrocarpon HOM05D005387 ORTHO05D006711 1.3e-54 218.0 129 81.4
CSS0042122 Camellia sinensis var. sinensis HOM05D005387 ORTHO05D006711 1.7e-54 217.6 129 80.6
Rhsim13G0024300 Rhododendron simsii HOM05D005387 ORTHO05D006711 3.0e-54 216.9 129 80.6
TWI23G0758 Tripterygium wilfordii HOM05D005387 ORTHO05D006711 3.0e-54 216.9 129 80.6
TAR362G0175 Trochodendron aralioides HOM05D005387 ORTHO05D006711 3.9e-54 216.5 129 80.6
Cfa006132 Carpinus fangiana HOM05D005387 ORTHO05D006711 5.1e-54 216.1 129 79.8
Cpa.g.sc52.27 Carica papaya HOM05D005387 ORTHO05D006711 8.7e-54 215.3 129 79.8
Sc18g0000660 Simmondsia chinensis HOM05D005387 ORTHO05D006711 8.7e-54 215.3 129 80.6
Haze_04719 Corylus avellana HOM05D005387 ORTHO05D006711 1.5e-53 214.5 129 79.1
Oeu015966.1 Olea europaea HOM05D005387 ORTHO05D006711 2.5e-53 213.8 129 79.1
SalBow4G1053 Salvia bowleyana HOM05D005387 ORTHO05D006711 4.3e-53 213.0 129 78.3
GSVIVG01011125001 Vitis vinifera HOM05D005387 ORTHO05D006711 4.3e-53 213.0 128 79.7
CiPaw.07G092300 Carya illinoinensis HOM05D005387 ORTHO05D006711 7.3e-53 212.2 129 78.3
QL12p022031 Quercus lobata HOM05D005387 ORTHO05D006711 7.3e-53 212.2 129 79.1
Hma1.2p1_0257F.1_g103540 Hydrangea macrophylla HOM05D005387 ORTHO05D006711 1.3e-52 211.5 129 77.5
Lj2A1174G27 Lonicera japonica HOM05D005387 ORTHO05D006711 1.3e-52 211.5 129 78.3
Lsat_1_v5_gn_9_3880 Lactuca sativa HOM05D005387 ORTHO05D006711 2.1e-52 210.7 129 77.5
Manes.05G075500 Manihot esculenta HOM05D005387 ORTHO05D006711 2.1e-52 210.7 129 79.1
Thecc.01G280400 Theobroma cacao HOM05D005387 ORTHO05D006711 2.1e-52 210.7 129 79.1
Gohir.A11G122400 Gossypium hirsutum HOM05D005387 ORTHO05D006711 3.6e-52 209.9 129 79.1
Gohir.D11G127700 Gossypium hirsutum HOM05D005387 ORTHO05D006711 3.6e-52 209.9 129 79.1
Gorai.007G136500 Gossypium raimondii HOM05D005387 ORTHO05D006711 3.6e-52 209.9 129 79.1
CANSAT25G2972 Cannabis sativa HOM05D005387 ORTHO05D006711 4.8e-52 209.5 129 76.7
CDE06G0365 Ceratophyllum demersum HOM05D005387 ORTHO05D006711 4.8e-52 209.5 123 82.1
ECA247G0058 Erigeron canadensis HOM05D005387 ORTHO05D006711 8.1e-52 208.8 129 77.5
MELO3C015844.2 Cucumis melo HOM05D005387 ORTHO05D006711 1.1e-51 208.4 129 77.5
Migut.D00288 Erythranthe guttata HOM05D005387 ORTHO05D006711 1.4e-51 208.0 126 78.6
THA.LOC104825999 Tarenaya hassleriana HOM05D005387 ORTHO05D006711 1.4e-51 208.0 126 79.4
Ciclev10018975m.g Citrus clementina HOM05D005387 ORTHO05D006711 2.4e-51 207.2 129 77.5
Cc01_g19560 Coffea canephora HOM05D005387 ORTHO05D006711 2.4e-51 207.2 129 76.7
COL.COLO4_09105 Corchorus olitorius HOM05D005387 ORTHO05D006711 3.1e-51 206.8 129 77.5
CsaV3_7G028200 Cucumis sativus L. HOM05D005387 ORTHO05D006711 3.1e-51 206.8 129 76.7
Gorai.004G081200 Gossypium raimondii HOM05D005387 ORTHO05D006711 3.1e-51 206.8 129 79.1
Duzib211G0289 Durio zibethinus HOM05D005387 ORTHO05D006711 4.0e-51 206.5 129 77.5
HanXRQChr10g0282751 Helianthus annuus HOM05D005387 ORTHO05D006711 4.0e-51 206.5 129 76.0
Nn4g26234 Nelumbo nucifera HOM05D005387 ORTHO05D006711 4.0e-51 206.5 129 78.3
PSO210G3721 Papaver somniferum HOM05D005387 ORTHO05D006711 5.3e-51 206.1 129 75.2
PSO832G0722 Papaver somniferum HOM05D005387 ORTHO05D006711 5.3e-51 206.1 129 75.2
QL07p005503 Quercus lobata HOM05D005387 ORTHO05D006711 5.3e-51 206.1 130 76.9
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 6.9e-51 205.7 126 77.0
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 6.9e-51 205.7 126 77.0
PGR044G0219 Punica granatum HOM05D005387 ORTHO05D006711 9.0e-51 205.3 129 76.0
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.5e-50 204.5 126 77.0
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 1.5e-50 204.5 129 75.2
BolC8t46846H Brassica oleracea HOM05D005387 ORTHO05D006711 1.5e-50 204.5 126 77.0
CARHR002530 Cardamine hirsuta HOM05D005387 ORTHO05D006711 1.5e-50 204.5 127 78.0
SGA_v2.0_scaffold1G00463 Striga asiatica HOM05D005387 ORTHO05D006711 1.5e-50 204.5 129 74.4
Zm00001eb417930 Zea mays HOM05D005387 ORTHO05D006711 2.0e-50 204.1 129 73.6
Os05g0144800 Oryza sativa ssp. japonica HOM05D005387 ORTHO05D006711 3.4e-50 203.4 129 73.6
RcHm_v2.0_Chr6g0291151 Rosa chinensis HOM05D005387 ORTHO05D006711 3.4e-50 203.4 130 74.6
HPP92_023768 Vanilla planifolia HOM05D005387 ORTHO05D006711 3.4e-50 203.4 129 76.0
HPP92_026404 Vanilla planifolia HOM05D005387 ORTHO05D006711 3.4e-50 203.4 129 76.0
HanXRQChr04g0127651 Helianthus annuus HOM05D005387 ORTHO05D006711 4.5e-50 203.0 129 74.4
Ca_18819_v3 Cicer arietinum L. HOM05D005387 ORTHO05D006711 5.8e-50 202.6 129 74.4
Gohir.D08G076600 Gossypium hirsutum HOM05D005387 ORTHO05D006711 5.8e-50 202.6 129 77.5
Atru.chr5.1425 Acer truncatum HOM05D005387 ORTHO05D006711 7.6e-50 202.2 129 74.4
Thhalv10006888m.g Eutrema salsugineum HOM05D005387 ORTHO05D006711 7.6e-50 202.2 126 77.8
Psat1g104680 Pisum sativum HOM05D005387 ORTHO05D006711 7.6e-50 202.2 129 72.9
Eucgr.K03375 Eucalyptus grandis HOM05D005387 ORTHO05D006711 9.9e-50 201.8 129 76.0
Sed0006598 Sechium edule HOM05D005387 ORTHO05D006711 9.9e-50 201.8 129 75.2
AT1G03190 Arabidopsis thaliana HOM05D005387 ORTHO05D006711 1.3e-49 201.4 126 77.8
Glyma.02G082200 Glycine max HOM05D005387 ORTHO05D006711 1.3e-49 201.4 129 74.4
SHI14548 Sapria himalayana HOM05D005387 ORTHO05D006711 1.3e-49 201.4 129 73.6
VMungo0464G1141 Vigna mungo HOM05D005387 ORTHO05D006711 1.3e-49 201.4 129 74.4
arahy.Tifrunner.gnm1.ann1.4E1RNV Arachis hypogaea HOM05D005387 ORTHO05D006711 1.7e-49 201.1 129 73.6
ClCG09G006960 Citrullus lanatus HOM05D005387 ORTHO05D006711 1.7e-49 201.1 122 78.7
Glyma.16G167800 Glycine max HOM05D005387 ORTHO05D006711 1.7e-49 201.1 129 74.4
Phvul.004G095600 Phaseolus vulgaris HOM05D005387 ORTHO05D006711 1.7e-49 201.1 129 74.4
Medtr2g084735 Medicago truncatula HOM05D005387 ORTHO05D006711 2.2e-49 200.7 129 72.9
Sp1g02210 Schrenkiella parvula HOM05D005387 ORTHO05D006711 2.2e-49 200.7 126 77.0
Aqoxy5G00512 Aquilegia oxysepala HOM05D005387 ORTHO05D006711 3.8e-49 199.9 126 76.2
Lj2g0021203 Lotus japonicus HOM05D005387 ORTHO05D006711 3.8e-49 199.9 126 75.4
Aa31LG1G9340 Aethionema arabicum HOM05D005387 ORTHO05D006711 4.9e-49 199.5 126 76.2
AL1G12680 Arabidopsis lyrata HOM05D005387 ORTHO05D006711 6.4e-49 199.1 126 77.0
Carub.0001s0233 Capsella rubella HOM05D005387 ORTHO05D006711 6.4e-49 199.1 126 77.0
MD03G1266200 Malus domestica HOM05D005387 ORTHO05D006711 1.1e-48 198.4 129 72.9
Prupe.8G242000 Prunus persica HOM05D005387 ORTHO05D006711 1.1e-48 198.4 129 72.9
Potri.002G054000 Populus trichocarpa HOM05D005387 ORTHO05D006711 1.4e-48 198.0 129 73.6
TPR.G36709 Trifolium pratense HOM05D005387 ORTHO05D006711 1.4e-48 198.0 129 72.9
Nitab4.5_0000295g0200 Nicotiana tabacum HOM05D005387 ORTHO05D006711 2.4e-48 197.2 129 74.4
Nitab4.5_0006390g0070 Nicotiana tabacum HOM05D005387 ORTHO05D006711 2.4e-48 197.2 129 74.4
Peaxi162Scf00161g01216 Petunia axillaris HOM05D005387 ORTHO05D006711 2.4e-48 197.2 129 74.4
Solyc06g008970.4 Solanum lycopersicum HOM05D005387 ORTHO05D006711 4.2e-48 196.4 126 75.4
Sopen06g003750 Solanum pennellii HOM05D005387 ORTHO05D006711 4.2e-48 196.4 126 75.4
FAN15G0991 Fragaria x ananassa HOM05D005387 ORTHO05D006711 5.5e-48 196.1 130 72.3
FvH4_2g23690 Fragaria vesca HOM05D005387 ORTHO05D006711 2.1e-47 194.1 129 72.1
MBI18_g32210_MAGBIO Magnolia biondii HOM05D005387 ORTHO05D006711 2.7e-47 193.7 126 77.0
CAN.G1006.14 Capsicum annuum HOM05D005387 ORTHO05D006711 4.6e-47 193.0 123 76.4
FAN24G0367 Fragaria x ananassa HOM05D005387 ORTHO05D006711 1.3e-46 191.4 129 71.3
ATR0626G059 Amborella trichopoda HOM05D005387 ORTHO05D006711 1.8e-46 191.0 137 67.9
Pp3c10_16570 Physcomitrium patens HOM05D005387 ORTHO05D006711 6.7e-46 189.1 124 72.6
Lalb_Chr01g0009611 Lupinus albus HOM05D005387 ORTHO05D006711 8.7e-46 188.7 129 70.5
AagrBONN_evm.TU.Sc2ySwM_228.154 Anthoceros agrestis HOM05D005387 ORTHO05D006711 2.8e-44 183.7 137 63.5
SEGI_00354 Sequoiadendron giganteum HOM05D005387 ORTHO05D006711 4.8e-44 183.0 126 69.8
Mapoly0059s0089 Marchantia polymorpha HOM05D005387 ORTHO05D006711 2.4e-43 180.6 123 69.1
Thhalv10011297m.g Eutrema salsugineum HOM05D005387 ORTHO05D006711 4.0e-43 179.9 126 68.3
SMO118G0087 Selaginella moellendorffii HOM05D005387 ORTHO05D006711 1.5e-42 177.9 123 66.7
CBR_g47089 Chara braunii HOM05D005387 ORTHO05D006711 2.2e-41 174.1 129 61.2
Gohir.A08G068200 Gossypium hirsutum HOM05D005387 ORTHO05D006711 6.0e-39 166.0 99 80.8
RcHm_v2.0_Chr5g0076681 Rosa chinensis HOM05D005276 ORTHO05D006813 3.7e-36 156.8 216 43.5
unitig_0.g111 Utricularia gibba HOM05D005387 ORTHO05D006711 1.3e-33 148.3 90 77.8
CSS0029999 Camellia sinensis var. sinensis HOM05D005276 ORTHO05D006813 8.4e-33 145.6 214 42.1
SHI33552 Sapria himalayana HOM05D005387 ORTHO05D006711 5.5e-32 142.9 130 60.0
MCO11G848 Micromonas commoda HOM05D005387 ORTHO05D006711 7.2e-32 142.5 129 52.7
Rhsim05G0142600 Rhododendron simsii HOM05D005276 ORTHO05D006813 7.2e-32 142.5 221 45.2
Cre17.g706300 Chlamydomonas reinhardtii HOM05D005387 ORTHO05D006711 6.7e-30 136.0 141 45.4
Hma1.2p1_0370F.1_g137770 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 8.7e-30 135.6 218 40.8
PRCOL_00002595 Prasinoderma coloniale HOM05D005387 ORTHO05D006711 2.8e-28 130.6 130 50.8
Actinidia07622 Actinidia chinensis HOM05D005276 ORTHO05D006813 4.8e-28 129.8 219 40.6
Rhsim04G0165600 Rhododendron simsii HOM05D005276 ORTHO05D006813 4.1e-27 126.7 222 40.1
Haze_26829 Corylus avellana HOM05D005387 ORTHO05D006711 7.7e-26 122.5 129 45.7
vmacro22834 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 2.2e-25 120.9 187 43.9
AUR62044240 Chenopodium quinoa HOM05D005387 ORTHO05D006711 3.8e-25 120.2 64 90.6
Rhsim05G0197900 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.0e-25 119.8 183 43.2
PGR102G3141 Punica granatum HOM05D005276 ORTHO05D006813 5.7e-21 106.3 159 42.8
arahy.Tifrunner.gnm1.ann1.48M1R9 Arachis hypogaea HOM05D005387 ORTHO05D006711 9.7e-21 105.5 71 69.0
Lj3g0023477 Lotus japonicus HOM05D005276 ORTHO05D006813 1.7e-20 104.8 174 39.7
AUR62007973 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.8e-20 104.0 76 75.0
TWI23G0671 Tripterygium wilfordii HOM05D005276 ORTHO05D006813 4.8e-20 103.2 178 37.6
Hma1.2p1_2291F.1_g319080 Hydrangea macrophylla HOM05D005276 ORTHO05D006813 1.8e-19 101.3 167 40.1
vmacro00373 Vaccinium macrocarpon HOM05D005276 ORTHO05D006813 2.0e-18 97.8 180 41.1
AUR62044203 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.6e-18 97.4 64 78.1
VMungo0720G2128 Vigna mungo HOM05D005276 ORTHO05D006813 4.5e-18 96.7 235 34.9
PGR102G1949 Punica granatum HOM05D005276 ORTHO05D006813 1.3e-17 95.1 144 40.3
Rhsim10G0134800 Rhododendron simsii HOM05D005276 ORTHO05D339721 1.9e-16 91.3 123 41.5
Medtr8g038100 Medicago truncatula HOM05D005276 ORTHO05D006813 4.7e-15 86.7 135 39.3
SEGI_35002 Sequoiadendron giganteum HOM05D005276 ORTHO05D006813 4.7e-15 86.7 232 30.6
TPR.G22792 Trifolium pratense HOM05D005387 ORTHO05D006711 6.1e-15 86.3 129 41.1
AUR62037738 Chenopodium quinoa HOM05D005276 ORTHO05D006813 1.8e-14 84.7 164 31.1
Dinv42431 Davidia involucrata HOM05D005276 ORTHO05D006813 3.0e-14 84.0 190 33.7
Phvul.007G276500 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.0e-14 84.0 237 32.9
Phvul.007G276000 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 1.1e-13 82.0 219 33.3
Phvul.007G276600 Phaseolus vulgaris HOM05D005276 ORTHO05D006813 3.3e-13 80.5 129 38.0
PGR102G1815 Punica granatum HOM05D005276 ORTHO05D006813 3.3e-13 80.5 174 37.9
Dinv42430 Davidia involucrata HOM05D005276 ORTHO05D006813 9.7e-13 79.0 196 34.2
EL10Ac2g04798 Beta vulgaris HOM05D005276 ORTHO05D006813 7.7e-10 69.3 167 32.3
Medtr8g038070 Medicago truncatula HOM05D005276 ORTHO05D006813 1.7e-09 68.2 127 33.9
EL10Ac4g09362 Beta vulgaris HOM05D005276 ORTHO05D006813 3.8e-09 67.0 185 31.4
EL10Ac2g04799 Beta vulgaris HOM05D005276 ORTHO05D006813 8.5e-09 65.9 215 29.3
AUR62031308 Chenopodium quinoa HOM05D002644 ORTHO05D003267 1.8e-06 58.2 71 39.4
LjContig00272g0003041 Lotus japonicus HOM05D005276 ORTHO05D006813 2.3e-06 57.8 88 42.0


User provided reference genes

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