Gene: COL.COLO4_09105

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_09105
  • Transcript Identifier COL.rna7902
  • Gene Type Coding gene
  • Location AWUE01014120.1 : 31069-34816 : positive

Gene Family Information

  • ID HOM05D005387
  • #Genes/#Species 141/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna7902
  • GenBank OMP05028.1
  • id gene9077
  • gene_name COLO4_09105
  • uniprot A0A1R3KDC8

Descriptions

  • Description Xeroderma pigmentosum group D protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT1G03190
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT1G03190
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc06g008970.4
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G03190
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc06g008970.4
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G03190
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR006555 ATP-dependent helicase, C-terminal
IPR001945 RAD3/XPD family
IPR006554 Helicase-like, DEXD box c2 type
IPR010643 Helical and beta-bridge domain
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR010614 DEAD2
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
14.6.3.2.1 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit XPD
15.3.3.5.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component RAD3/XPD