Gene: C08p00480
General Information
Structural Information
- Species Brassica napus
- Gene Identifier C08p00480
- Transcript Identifier C08p00480
- Gene Type Coding gene
- Location C08 : 391526-397083 : positive
Gene Family Information
- ID HOM05D005387
- #Genes/#Species 141/97
- Phylogenetic origin
- ID ORTHO05D006711
- #Genes/#Species 139/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid C08p00480.1_BnaDAR
- v5 BnaC08g00170D
- single_cell_id C08p00480.1-BnaDAR
- ensembl GSBRNA2T00145370001
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | IEA | InterPro | nucleotide-excision repair | |
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:0006281 | ISO | PLAZA Integrative Orthology | DNA repair | AT1G03190 |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc06g008970.4 |
| GO:0009408 | ISO | PLAZA Integrative Orthology | response to heat | AT1G03190 |
| GO:0009411 | ISO | PLAZA Integrative Orthology | response to UV | AT1G03190 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016818 | IEA | InterPro | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G03190 |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc06g008970.4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001945 | RAD3/XPD family |
| IPR013020 | ATP-dependent helicase Rad3/Chl1-like |
| IPR045028 | Helicase superfamily 1/2, DinG/Rad3-like |
| IPR010614 | DEAD2 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR006555 | ATP-dependent helicase, C-terminal |
| IPR006554 | Helicase-like, DEXD box c2 type |
| IPR010643 | Helical and beta-bridge domain |
| Mapman id | Description |
|---|---|
| 13.3.5.5.1.9 | Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (BVF1) |
| 14.6.3.2.1 | DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit XPD |
| 15.3.3.5.1.1 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component RAD3/XPD |