Gene: PGR044G0219

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR044G0219
  • Transcript Identifier PGR044G0219.01
  • Gene Type Coding gene
  • Location NC_045134.1 : 27980255-27985278 : negative

Gene Family Information

  • ID HOM05D005387
  • #Genes/#Species 141/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031372657.1
  • name LOC116187835
  • name XM_031516797.1
  • id gene-LOC116187835
  • uniprot A0A218W412

Descriptions

  • product general transcription and DNA repair factor IIH helicase subunit XPD-like, transcript variant X1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009411
ISO
PLAZA Integrative Orthologyresponse to UV AT1G03190
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT1G03190
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc06g008970.4
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G03190
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc06g008970.4
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G03190
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010643 Helical and beta-bridge domain
IPR001945 RAD3/XPD family
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR006555 ATP-dependent helicase, C-terminal
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR006554 Helicase-like, DEXD box c2 type
IPR010614 DEAD2
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
Mapman id Description
14.6.3.2.1 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit XPD
15.3.3.5.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component RAD3/XPD