Gene: Solyc06g008970.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g008970.4
  • Transcript Identifier Solyc06g008970.4.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 2914607-2922945 : negative

Gene Family Information

  • ID HOM05D005387
  • #Genes/#Species 141/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g008970.4.1
  • uniprot A0A3Q7HJU4
  • gene_id Solyc06g008970

Descriptions

  • Description RNA helicase DEAH-box18
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006979
IBA
GOA Databaseresponse to oxidative stress
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0006289
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0000717
IBA
GOA Databasenucleotide-excision repair, DNA duplex unwinding
GO:0033683
IBA
GOA Databasenucleotide-excision repair, DNA incision
GO:0009411
IBA
GOA Databaseresponse to UV
GO:0006366
IBA
GOA Databasetranscription by RNA polymerase II
GO:0045951
IBA
GOA Databasepositive regulation of mitotic recombination
GO:0006281
ISO
PLAZA Integrative OrthologyDNA repair AT1G03190
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT1G03190
GO:0016070
IDA
Gene OntologyRNA metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003678
IBA
IEA
GOA DatabaseDNA helicase activity
GO:0003678
IEA
InterProDNA helicase activity
GO:0003684
IBA
GOA Databasedamaged DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G03190
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IDA
Gene OntologyRNA helicase activity1
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001945 RAD3/XPD family
IPR006555 ATP-dependent helicase, C-terminal
IPR006554 Helicase-like, DEXD box c2 type
IPR045028 Helicase superfamily 1/2, DinG/Rad3-like
IPR013020 ATP-dependent helicase Rad3/Chl1-like
IPR010643 Helical and beta-bridge domain
IPR010614 DEAD2
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
14.6.3.2.1 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit XPD
15.3.3.5.1.1 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component RAD3/XPD