Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.2e-120 436.8 274 100.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.0e-82 310.8 273 81.7
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 6.6e-82 308.1 273 82.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.6e-80 303.5 294 74.1
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.8e-79 300.1 283 75.3
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 9.8e-78 294.3 287 70.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.2e-77 293.1 282 74.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 4.9e-77 292.0 280 77.1
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.4e-77 291.6 286 70.6
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 3.2e-76 289.3 297 68.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.1e-76 288.9 295 65.8
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 7.0e-76 288.1 184 83.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.6e-75 287.0 277 70.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 2.7e-75 286.2 297 68.0
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.7e-74 283.5 165 89.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.0e-74 282.7 302 61.6
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.9e-74 282.3 301 65.8
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.0e-74 282.0 271 66.1
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.6e-74 281.2 190 80.5
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 8.6e-74 281.2 305 66.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 8.6e-74 281.2 302 65.6
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-73 280.8 288 64.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.1e-73 280.8 171 83.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.5e-73 280.4 304 65.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.5e-73 280.4 284 68.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.9e-73 280.0 259 68.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.3e-73 279.3 292 72.3
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.6e-73 278.5 178 82.6
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.6e-73 278.5 178 82.6
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 7.3e-73 278.1 208 75.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.3e-73 278.1 256 66.8
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 7.3e-73 278.1 294 71.1
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 9.5e-73 277.7 205 79.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.2e-72 277.3 279 67.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.2e-72 277.3 177 83.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.2e-72 277.3 280 76.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.1e-72 276.6 186 80.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.1e-72 276.6 296 69.9
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.8e-72 276.2 177 83.6
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.8e-72 276.2 177 83.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.6e-72 275.8 194 77.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 4.7e-72 275.4 182 79.7
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.7e-72 275.4 203 74.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.2e-72 275.0 170 83.5
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 6.2e-72 275.0 293 69.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 8.1e-72 274.6 170 83.5
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.1e-71 274.2 151 90.7
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-71 273.9 252 69.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 190 76.3
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 252 69.8
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.4e-71 273.9 252 69.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.4e-71 273.9 190 76.3
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.4e-71 273.9 203 74.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.4e-71 273.9 286 70.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 180 81.1
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.4e-71 273.9 176 83.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-71 273.5 179 81.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.8e-71 273.5 303 66.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.8e-71 273.5 252 69.8
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.3e-71 273.1 303 66.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.3e-71 273.1 163 84.7
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.3e-71 273.1 290 69.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.0e-71 272.3 185 81.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.0e-71 272.3 150 90.7
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.0e-71 272.3 248 69.4
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.0e-71 272.3 248 69.4
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 5.2e-71 271.9 157 86.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.2e-71 271.9 157 86.6
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.2e-71 271.9 301 66.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.8e-71 271.6 164 86.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.9e-71 271.2 151 88.7
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.9e-71 271.2 186 79.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 8.9e-71 271.2 285 68.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 8.9e-71 271.2 254 72.4
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 8.9e-71 271.2 174 80.5
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.2e-70 270.8 151 88.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.2e-70 270.8 168 83.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.5e-70 270.4 297 65.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.5e-70 270.4 290 69.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.0e-70 270.0 288 71.9
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.0e-70 270.0 288 70.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.6e-70 269.6 173 81.5
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.4e-70 268.9 293 67.2
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.4e-70 268.9 248 68.1
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 5.8e-70 268.5 252 67.9
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 5.8e-70 268.5 152 90.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 7.5e-70 268.1 284 69.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.3e-69 267.3 246 69.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.7e-69 266.9 158 86.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 2.2e-69 266.5 173 81.5
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.4e-69 265.0 260 63.1
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.4e-69 265.0 145 90.3
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 8.3e-69 264.6 289 67.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.3e-69 264.6 189 77.8
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.1e-68 264.2 164 82.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-68 264.2 164 84.1
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.4e-68 263.8 284 70.4
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.9e-68 263.5 291 67.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.4e-68 263.1 248 69.4
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.2e-68 262.7 283 65.4
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.4e-68 261.9 175 81.7
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.1e-68 261.5 284 63.0
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.5e-67 259.2 199 72.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.6e-67 258.8 169 79.9
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 4.6e-67 258.8 161 82.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 161 81.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.0e-66 256.1 173 79.2
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.9e-66 255.8 173 79.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.9e-66 255.8 277 71.5
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.6e-66 255.0 151 86.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-65 254.2 153 84.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-65 254.2 153 84.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.3e-65 252.3 294 64.3
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.3e-65 252.3 294 64.3
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.3e-65 251.5 287 66.2
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 9.5e-65 251.1 287 65.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.2e-64 248.4 153 83.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.2e-63 245.4 260 64.2
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.5e-62 243.8 273 63.4
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.0e-62 243.4 285 67.0
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.4e-62 242.3 210 67.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 5.8e-62 241.9 151 82.8
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 5.8e-62 241.9 280 67.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 5.8e-62 241.9 280 67.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.3e-61 240.7 297 66.0
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.9e-61 239.6 303 60.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 3.8e-61 239.2 149 83.9
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 8.4e-61 238.0 130 91.5
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.6e-59 233.8 302 56.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.7e-59 233.0 142 83.1
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 6.0e-59 231.9 236 62.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 6.6e-58 228.4 171 74.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 8.6e-58 228.0 303 57.8
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-57 227.6 293 60.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.5e-57 227.3 186 68.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-55 220.3 136 81.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.2e-54 217.6 150 76.7
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.6e-54 216.5 247 70.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-52 210.7 192 68.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.2e-52 209.5 244 55.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-51 207.6 144 76.4
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.6e-50 201.8 190 63.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.6e-49 198.7 169 66.3
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.3e-45 187.6 156 63.5
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.6e-43 180.6 152 63.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.5e-43 179.5 198 55.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-42 177.6 214 55.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.9e-42 176.0 124 73.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 4.8e-40 169.1 174 58.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.2e-36 156.4 94 83.0
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.3e-34 150.2 109 72.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 6.7e-34 148.7 199 52.3
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.7e-34 148.3 197 50.8
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-32 143.7 196 49.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-32 143.7 196 49.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-31 141.4 197 50.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 7.9e-27 125.2 138 52.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.3e-25 119.4 202 45.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.4e-18 97.8 53 86.8
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-15 88.2 120 62.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.2e-14 84.7 50 80.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.4e-14 83.2 148 52.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.7e-14 82.0 40 100.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 6.9e-07 58.9 153 37.3


User provided reference genes

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