Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.4e-248 862.4 439 100.0
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 7.3e-184 647.5 452 75.0
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 2.5e-160 569.3 443 64.6
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 2.1e-154 549.7 424 66.0
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 1.0e-153 547.4 430 70.5
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 1.0e-153 547.4 440 62.3
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.3e-151 540.4 431 64.3
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 3.7e-151 538.9 431 64.0
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 8.2e-151 537.7 433 62.4
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.4e-150 537.0 418 64.6
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 1.8e-150 536.6 437 62.0
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 2.4e-150 536.2 417 64.5
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 4.1e-150 535.4 425 64.7
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 4.1e-150 535.4 434 62.7
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.0e-148 530.8 442 60.6
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 5.0e-148 528.5 417 64.0
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 3.2e-147 525.8 450 60.0
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 3.2e-147 525.8 450 60.4
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 9.4e-147 524.2 436 62.4
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.7e-146 522.7 441 61.0
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 7.9e-146 521.2 399 66.2
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.8e-145 520.0 417 63.3
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.1e-145 518.5 455 60.7
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.5e-144 516.9 420 62.4
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.5e-144 516.2 433 61.9
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 3.3e-144 515.8 445 62.0
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 3.3e-144 515.8 441 61.5
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 4.3e-144 515.4 442 61.1
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 4.3e-144 515.4 452 61.5
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 7.4e-144 514.6 428 60.7
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 7.4e-144 514.6 451 59.9
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.7e-143 513.5 425 61.9
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 6.3e-143 511.5 447 60.4
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.1e-142 510.8 438 60.7
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 1.1e-142 510.8 438 60.7
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 1.1e-142 510.8 445 61.1
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 1.8e-142 510.0 439 59.9
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 1.8e-142 510.0 440 59.8
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 2.4e-142 509.6 439 59.9
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 9.1e-142 507.7 439 59.7
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 9.1e-142 507.7 450 58.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.2e-141 507.3 443 58.9
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 2.0e-141 506.5 438 60.3
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.0e-141 506.5 443 59.8
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 2.6e-141 506.1 404 62.9
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.9e-141 505.0 414 60.9
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.9e-141 505.0 414 60.9
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.3e-140 503.8 373 66.2
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.9e-140 502.7 437 59.5
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 2.9e-140 502.7 474 58.0
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 2.9e-140 502.7 446 59.2
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 3.8e-140 502.3 437 60.4
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 5.0e-140 501.9 441 59.0
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 1.4e-139 500.4 433 60.0
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 2.5e-139 499.6 424 60.4
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 5.5e-139 498.4 431 59.2
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 1.2e-138 497.3 436 61.2
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 1.6e-138 496.9 411 60.6
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 2.7e-138 496.1 411 62.3
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.0e-137 494.2 425 59.8
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 1.0e-137 494.2 398 64.3
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 3.0e-137 492.7 439 58.5
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 3.9e-137 492.3 439 57.2
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 6.7e-137 491.5 436 58.7
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 2.0e-136 490.0 387 64.6
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 5.7e-136 488.4 419 59.4
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 2.2e-135 486.5 429 59.0
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 8.2e-135 484.6 440 58.4
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.1e-134 484.2 436 57.8
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.8e-134 483.4 427 59.5
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 3.1e-134 482.6 440 57.5
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 5.3e-134 481.9 439 57.4
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 7.0e-134 481.5 408 61.8
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 2.0e-133 479.9 439 57.6
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 5.9e-133 478.4 468 54.7
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 5.0e-132 475.3 444 57.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.5e-131 473.0 458 55.9
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 2.5e-131 473.0 460 55.4
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.9e-129 465.7 440 56.1
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 3.9e-129 465.7 432 56.9
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 5.2e-129 465.3 402 59.7
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.1e-128 464.2 432 56.7
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 1.5e-128 463.8 529 50.7
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 7.4e-128 461.5 444 55.6
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 8.2e-127 458.0 439 56.0
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 4.1e-126 455.7 382 60.2
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.6e-125 453.8 451 54.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.7e-124 450.3 403 58.3
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 3.8e-124 449.1 436 54.6
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 1.1e-123 447.6 422 58.8
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.6e-122 442.6 363 64.2
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 9.1e-118 427.9 459 51.0
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.5e-117 426.0 451 49.2
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 3.5e-117 426.0 454 50.7
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 4.5e-117 425.6 445 51.5
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 2.5e-107 393.3 409 53.5
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 1.6e-106 390.6 429 50.8
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.6e-104 383.3 486 46.1
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.1e-102 377.9 524 43.9
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 2.7e-101 373.2 319 61.1
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 5.0e-100 369.0 378 52.9
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.4e-97 360.9 300 62.7
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 3.7e-95 352.8 438 47.3
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.4e-86 324.3 306 56.9
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 8.9e-81 305.1 295 54.9
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 2.5e-75 287.0 407 42.5
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 4.9e-71 272.7 490 38.6
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.1e-69 267.3 235 57.4
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 4.4e-64 249.6 248 54.0
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 6.6e-60 235.7 289 45.3
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 4.3e-51 206.5 126 76.2
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 4.3e-51 206.5 126 76.2
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 2.5e-46 190.7 195 54.4
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 4.3e-43 179.9 341 32.8
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 5.8e-40 169.5 128 64.1
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 5.0e-39 166.4 113 70.8
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 5.5e-30 136.3 137 54.0
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 1.2e-24 118.6 190 39.5
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 1.2e-21 108.6 127 51.2
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-21 107.8 63 73.0
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 2.0e-19 101.3 129 48.8
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 2.9e-15 87.4 95 46.3
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-13 80.5 133 37.6
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 9.1e-09 65.9 159 32.1
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.0e-08 64.7 159 32.1
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-08 64.3 197 27.4
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 2.7e-08 64.3 177 29.9
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 3.5e-08 63.9 169 32.5
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 4.5e-08 63.5 159 30.8
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 5.9e-08 63.2 216 27.3
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 5.9e-08 63.2 216 27.3
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 5.9e-08 63.2 207 28.5
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 7.7e-08 62.8 177 29.4
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 7.7e-08 62.8 177 29.4
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 7.7e-08 62.8 177 29.4
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.7e-08 62.8 177 29.9
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 1.0e-07 62.4 151 35.1
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 1.0e-07 62.4 215 25.1
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 1.0e-07 62.4 143 30.1
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.3e-07 62.0 169 32.0
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 2.2e-07 61.2 175 27.4
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.9e-07 60.8 195 27.2
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 3.8e-07 60.5 162 30.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 3.8e-07 60.5 195 27.2
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.8e-07 60.5 195 27.2
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.1e-06 58.9 169 29.0
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-06 58.9 169 30.2
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 1.1e-06 58.9 169 30.2
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 1.1e-06 58.9 169 30.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 1.1e-06 58.9 196 27.6
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 1.5e-06 58.5 203 24.6
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 1.5e-06 58.5 197 27.4
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 1.9e-06 58.2 197 26.9
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 2.5e-06 57.8 169 29.0
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 2.5e-06 57.8 170 30.0
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.5e-06 57.8 196 26.5
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 2.5e-06 57.8 200 25.5
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 2.5e-06 57.8 196 27.6
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 3.2e-06 57.4 155 29.7
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 4.2e-06 57.0 158 29.1
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 4.2e-06 57.0 207 26.1
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 4.2e-06 57.0 162 31.5
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 5.5e-06 56.6 173 30.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 5.5e-06 56.6 173 30.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 5.5e-06 56.6 197 25.9
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 7.2e-06 56.2 203 24.1
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 7.2e-06 56.2 198 24.7
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 7.2e-06 56.2 161 28.6
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.2e-06 56.2 162 30.2
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 7.2e-06 56.2 208 27.4
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 9.4e-06 55.8 203 22.7
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 9.4e-06 55.8 139 31.7
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.4e-06 55.8 123 30.9
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 9.4e-06 55.8 204 25.0
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 9.4e-06 55.8 159 28.9
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 9.4e-06 55.8 200 27.0


User provided reference genes

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