Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 3.7e-224 781.2 384 100.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.4e-133 480.3 345 73.0
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.7e-132 474.9 346 71.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 9.7e-132 474.2 345 72.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.7e-131 473.4 346 70.8
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 1.7e-131 473.4 345 71.6
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 2.2e-131 473.0 346 70.5
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.9e-128 462.6 357 69.2
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.5e-128 461.1 351 68.7
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.5e-127 460.3 357 69.5
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.5e-127 459.5 355 69.6
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.5e-127 459.5 357 68.6
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 3.2e-127 459.1 357 67.8
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.2e-127 458.8 346 69.4
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.2e-127 458.8 345 70.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 7.2e-127 458.0 358 69.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.6e-126 456.8 357 67.5
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.6e-126 455.7 347 68.6
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 6.1e-126 454.9 345 70.1
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 6.1e-126 454.9 360 68.1
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 6.1e-126 454.9 345 69.3
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 6.1e-126 454.9 346 70.8
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 8.0e-126 454.5 345 69.3
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 8.0e-126 454.5 360 68.3
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.0e-125 454.1 360 68.6
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.4e-125 453.8 348 67.8
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.8e-125 453.4 345 69.6
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.8e-125 453.4 357 68.6
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 4.0e-125 452.2 360 67.8
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 8.8e-125 451.1 345 68.4
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 2.0e-124 449.9 345 69.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 3.3e-124 449.1 354 68.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.3e-124 449.1 352 69.3
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 4.4e-124 448.7 346 66.2
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 5.7e-124 448.4 345 68.1
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 1.3e-123 447.2 346 69.1
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.7e-123 446.8 347 67.7
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.8e-123 446.0 352 65.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 3.7e-123 445.7 361 66.5
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.4e-122 443.7 348 69.5
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 5.3e-122 441.8 354 66.9
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.3e-122 441.8 346 68.2
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 7.0e-122 441.4 349 69.6
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.6e-121 440.3 367 62.9
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-120 436.8 352 65.1
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.7e-120 436.8 346 67.1
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.8e-120 435.6 354 64.7
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 3.8e-120 435.6 346 66.8
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 6.5e-120 434.9 354 64.4
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 6.5e-120 434.9 354 64.4
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.5e-119 433.0 354 64.1
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.5e-119 433.0 354 64.1
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 5.5e-119 431.8 352 63.9
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 5.5e-119 431.8 352 63.9
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.5e-119 431.8 354 64.1
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.2e-118 430.6 349 67.0
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.2e-118 430.6 360 64.7
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.6e-118 430.3 360 65.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 3.6e-118 429.1 354 63.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 8.0e-118 427.9 347 65.7
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 8.0e-118 427.9 360 64.2
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 2.3e-117 426.4 352 65.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 4.0e-117 425.6 359 62.7
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 5.2e-117 425.2 367 61.3
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 8.8e-117 424.5 359 61.8
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 8.8e-117 424.5 360 61.4
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 8.8e-117 424.5 359 63.5
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 8.8e-117 424.5 365 63.3
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.2e-116 424.1 359 61.8
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 4.4e-116 422.2 345 64.6
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 9.8e-116 421.0 350 65.1
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.7e-115 420.2 352 64.5
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.8e-114 416.8 306 72.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 4.1e-114 415.6 354 62.4
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.5e-113 412.5 350 63.7
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 3.5e-113 412.5 346 62.4
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 2.2e-112 409.8 378 60.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.0e-112 408.7 370 60.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.5e-111 406.4 345 64.1
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.5e-111 405.2 364 61.0
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 7.2e-111 404.8 346 61.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 9.5e-111 404.4 362 61.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.0e-109 401.0 353 61.2
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.0e-109 399.4 361 60.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 5.2e-109 398.7 369 60.4
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.5e-108 397.1 303 70.0
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.5e-108 397.1 331 62.2
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-108 396.7 369 59.9
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 5.7e-108 395.2 352 60.8
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.7e-108 395.2 352 59.9
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 9.8e-108 394.4 347 61.1
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 9.8e-108 394.4 353 60.3
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.7e-107 393.7 339 62.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.7e-107 392.5 348 60.9
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 4.9e-107 392.1 346 60.7
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.8e-106 390.2 349 60.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 7.0e-106 388.3 348 60.1
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.2e-105 387.5 353 59.2
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.7e-105 386.3 349 59.9
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.0e-104 384.4 353 58.4
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 1.3e-104 384.0 347 60.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 3.8e-104 382.5 345 59.7
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.6e-104 381.7 347 59.9
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 8.6e-104 381.3 347 59.7
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.5e-103 380.6 347 59.4
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 4.3e-103 379.0 347 59.4
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 5.6e-103 378.6 345 60.6
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.8e-101 373.6 285 70.5
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 5.7e-100 368.6 346 58.1
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.7e-99 367.1 333 61.0
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 8.3e-99 364.8 370 55.4
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.6e-96 355.1 311 64.3
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 1.4e-93 347.4 347 54.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.7e-91 339.3 380 48.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 6.4e-91 338.6 338 56.8
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.9e-90 337.0 346 53.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.7e-88 330.5 328 56.7
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.0e-88 329.7 351 51.0
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.3e-87 326.2 291 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.1e-79 301.2 348 47.4
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.4e-74 284.3 295 53.9
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.0e-72 278.1 259 59.5
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.1e-70 270.4 280 56.1
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.9e-61 238.8 168 77.4
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.5e-55 220.3 150 78.0
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.1e-53 214.9 160 71.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.0e-48 198.4 356 35.7
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 2.3e-48 197.2 195 52.3
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.1e-47 194.9 251 44.6
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 6.2e-46 189.1 258 47.3
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.5e-39 167.2 327 37.9
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.5e-36 157.9 145 52.4
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.7e-35 154.5 217 39.6
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.0e-32 145.2 175 44.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.3e-32 144.8 91 80.2
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.9e-32 143.3 121 65.3
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.8e-29 134.4 319 30.7
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 3.8e-27 126.7 113 58.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.6e-25 121.3 71 73.2
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.1e-25 119.4 151 49.7
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.3e-24 117.5 143 53.8
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 8.8e-24 115.5 84 70.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.4e-21 108.2 143 51.0
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 3.1e-21 107.1 133 51.1
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 6.9e-21 105.9 133 50.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 3.0e-16 90.5 92 53.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 3.0e-16 90.5 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 3.0e-16 90.5 51 84.3
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-11 74.3 142 40.8


User provided reference genes

Program Settings