Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv25799 Davidia involucrata HOM05D001605 ORTHO05D003014 3.8e-67 258.1 134 100.0
Dinv25800 Davidia involucrata HOM05D001605 ORTHO05D003014 2.0e-31 139.4 70 98.6
Dinv25801 Davidia involucrata HOM05D001605 ORTHO05D003014 1.6e-25 119.8 70 84.3
Dinv41129 Davidia involucrata HOM05D001605 ORTHO05D003014 2.8e-25 119.0 72 81.9
Lj4C691T3 Lonicera japonica HOM05D001605 ORTHO05D003014 8.1e-25 117.5 69 84.1
Hma1.2p1_0107F.1_g051400 Hydrangea macrophylla HOM05D001605 ORTHO05D003014 1.1e-24 117.1 72 81.9
CSS0008222 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D003014 2.3e-24 115.9 70 80.0
Manes.02G174700 Manihot esculenta HOM05D001605 ORTHO05D003014 2.3e-24 115.9 70 81.4
Manes.18G086700 Manihot esculenta HOM05D001605 ORTHO05D003014 4.0e-24 115.2 70 81.4
Atru.chr13.1704 Acer truncatum HOM05D001605 ORTHO05D003014 6.8e-24 114.4 70 81.4
DCAR_010233 Daucus carota HOM05D001605 ORTHO05D003014 6.8e-24 114.4 69 81.2
Rhsim06G0090800 Rhododendron simsii HOM05D001605 ORTHO05D003014 1.5e-23 113.2 68 83.8
CSS0028371 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D003014 2.6e-23 112.5 69 81.2
Prupe.8G018000 Prunus persica HOM05D001605 ORTHO05D003014 3.4e-23 112.1 70 78.6
vmacro21127 Vaccinium macrocarpon HOM05D001605 ORTHO05D003014 9.8e-23 110.5 69 79.7
ClCG08G006430 Citrullus lanatus HOM05D001605 ORTHO05D003014 1.3e-22 110.2 70 78.6
MELO3C008414.2 Cucumis melo HOM05D001605 ORTHO05D003014 1.3e-22 110.2 70 78.6
CsaV3_6G031000 Cucumis sativus L. HOM05D001605 ORTHO05D003014 1.3e-22 110.2 70 78.6
CANSAT25G3051 Cannabis sativa HOM05D001605 ORTHO05D003014 1.7e-22 109.8 70 78.6
Cpa.g.sc188.8 Carica papaya HOM05D001605 ORTHO05D003014 2.2e-22 109.4 70 75.7
Sed0025239 Sechium edule HOM05D001605 ORTHO05D003014 3.7e-22 108.6 69 78.3
Gohir.D02G073200 Gossypium hirsutum HOM05D001605 ORTHO05D003014 4.9e-22 108.2 70 78.6
Gorai.005G082600 Gossypium raimondii HOM05D001605 ORTHO05D003014 4.9e-22 108.2 70 78.6
Duzib041G0436 Durio zibethinus HOM05D001605 ORTHO05D003014 6.4e-22 107.8 70 78.6
Gohir.A02G067000 Gossypium hirsutum HOM05D001605 ORTHO05D003014 6.4e-22 107.8 70 78.6
Gohir.D05G242900 Gossypium hirsutum HOM05D001605 ORTHO05D003014 6.4e-22 107.8 70 78.6
Gorai.009G252200 Gossypium raimondii HOM05D001605 ORTHO05D003014 6.4e-22 107.8 70 78.6
Actinidia16593 Actinidia chinensis HOM05D001605 ORTHO05D003014 8.3e-22 107.5 69 76.8
Thecc.08G143700 Theobroma cacao HOM05D001605 ORTHO05D003014 8.3e-22 107.5 70 77.1
Haze_17697 Corylus avellana HOM05D001605 ORTHO05D003014 1.9e-21 106.3 70 75.7
Sed0025518 Sechium edule HOM05D001605 ORTHO05D003014 1.9e-21 106.3 69 79.7
Duzib116G0915 Durio zibethinus HOM05D001605 ORTHO05D003014 3.2e-21 105.5 70 75.7
Gohir.A05G241600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 3.2e-21 105.5 69 78.3
Gohir.A05G295400 Gossypium hirsutum HOM05D001605 ORTHO05D003014 5.4e-21 104.8 70 74.3
Gorai.009G312800 Gossypium raimondii HOM05D001605 ORTHO05D003014 1.2e-20 103.6 70 77.1
Nn5g28614 Nelumbo nucifera HOM05D001605 ORTHO05D003014 1.2e-20 103.6 70 72.9
Potri.004G162500 Populus trichocarpa HOM05D001605 ORTHO05D003014 2.1e-20 102.8 71 74.6
Gohir.A05G269500 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.7e-20 102.4 70 80.0
Gohir.D05G271600 Gossypium hirsutum HOM05D001605 ORTHO05D003014 2.7e-20 102.4 70 80.0
Gorai.009G284500 Gossypium raimondii HOM05D001605 ORTHO05D003014 2.7e-20 102.4 70 80.0
Nitab4.5_0010232g0010 Nicotiana tabacum HOM05D001605 ORTHO05D003014 3.5e-20 102.1 70 71.4
TWI34G1926 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 3.5e-20 102.1 69 76.8
CiPaw.16G018200 Carya illinoinensis HOM05D001605 ORTHO05D003014 6.0e-20 101.3 68 75.0
Eucgr.F02745 Eucalyptus grandis HOM05D001605 ORTHO05D003014 6.0e-20 101.3 70 70.0
GSVIVG01010022001 Vitis vinifera HOM05D001605 ORTHO05D003014 6.0e-20 101.3 70 70.0
Rhsim12G0009500 Rhododendron simsii HOM05D001605 ORTHO05D003014 7.8e-20 100.9 80 68.8
Ciclev10000121m.g Citrus clementina HOM05D001605 ORTHO05D003014 1.7e-19 99.8 63 77.8
TAR381G0699 Trochodendron aralioides HOM05D001605 ORTHO05D003014 1.7e-19 99.8 62 77.4
Potri.009G124200 Populus trichocarpa HOM05D001605 ORTHO05D003014 2.3e-19 99.4 71 76.1
Sabra09G0095400 Salix brachista HOM05D001605 ORTHO05D003014 2.3e-19 99.4 70 77.1
Solyc04g064700.4 Solanum lycopersicum HOM05D001605 ORTHO05D003014 3.9e-19 98.6 70 70.0
Sopen04g026660 Solanum pennellii HOM05D001605 ORTHO05D003014 3.9e-19 98.6 70 70.0
PGSC0003DMG401024850 Solanum tuberosum HOM05D001605 ORTHO05D003014 3.9e-19 98.6 70 70.0
Hund26733 Selenicereus undatus HOM05D001605 ORTHO05D003014 5.1e-19 98.2 70 72.9
Peaxi162Scf00263g00122 Petunia axillaris HOM05D001605 ORTHO05D003014 6.6e-19 97.8 68 70.6
Nitab4.5_0000445g0150 Nicotiana tabacum HOM05D001605 ORTHO05D003014 8.6e-19 97.4 69 68.1
TAR625G1035 Trochodendron aralioides HOM05D001605 ORTHO05D003014 1.5e-18 96.7 61 77.0
Peaxi162Scf00220g00015 Petunia axillaris HOM05D001605 ORTHO05D003014 1.9e-18 96.3 70 67.1
COL.COLO4_08860 Corchorus olitorius HOM05D001605 ORTHO05D003014 2.5e-18 95.9 70 72.9
TWI60G0151 Tripterygium wilfordii HOM05D001605 ORTHO05D003014 5.6e-18 94.7 70 75.7
CAN.G134.93 Capsicum annuum HOM05D001605 ORTHO05D003014 9.5e-18 94.0 70 64.3
Cfa018371 Carpinus fangiana HOM05D001605 ORTHO05D003014 1.6e-17 93.2 68 72.1
Ah.05g167510 Amaranthus hybridus HOM05D001605 ORTHO05D003014 2.1e-17 92.8 70 70.0
MSTRG.1376 Avicennia marina HOM05D001605 ORTHO05D003014 2.1e-17 92.8 70 67.1
AUR62026789 Chenopodium quinoa HOM05D001605 ORTHO05D003014 2.8e-17 92.4 69 69.6
MD05G1013100 Malus domestica HOM05D001605 ORTHO05D003014 6.2e-17 91.3 70 60.0
QL02p025489 Quercus lobata HOM05D001605 ORTHO05D003014 8.1e-17 90.9 54 83.3
Actinidia17799 Actinidia chinensis HOM05D001605 ORTHO05D003014 1.1e-16 90.5 73 67.1
Nitab4.5_0008996g0020 Nicotiana tabacum HOM05D001605 ORTHO05D003014 1.1e-16 90.5 85 62.4
EL10Ac1g01470 Beta vulgaris HOM05D001605 ORTHO05D003014 1.4e-16 90.1 69 68.1
THA.LOC104798874 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 1.4e-16 90.1 70 68.6
THA.LOC104806843 Tarenaya hassleriana HOM05D001605 ORTHO05D003014 1.4e-16 90.1 70 68.6
SalBow7G2351 Salvia bowleyana HOM05D001605 ORTHO05D003014 1.8e-16 89.7 67 68.7
Aqoxy3G04296 Aquilegia oxysepala HOM05D001605 ORTHO05D003014 4.0e-16 88.6 71 59.2
Migut.C01045 Erythranthe guttata HOM05D001605 ORTHO05D003014 5.2e-16 88.2 67 65.7
SGA_v2.0_scaffold48G17942 Striga asiatica HOM05D001605 ORTHO05D003014 1.5e-15 86.7 71 64.8
Cc10_g12970 Coffea canephora HOM05D001605 ORTHO05D003014 3.4e-15 85.5 71 64.8
MD10G1013600 Malus domestica HOM05D001605 ORTHO05D003014 9.9e-15 84.0 70 58.6
PSO063G1730 Papaver somniferum HOM05D001605 ORTHO05D003014 2.2e-14 82.8 69 60.9
PSO782G0565 Papaver somniferum HOM05D001605 ORTHO05D003014 2.2e-14 82.8 69 60.9
AUR62013483 Chenopodium quinoa HOM05D001605 ORTHO05D003014 2.9e-14 82.4 54 75.9
ECA247G0063 Erigeron canadensis HOM05D001605 ORTHO05D003014 2.9e-14 82.4 70 62.9
PGR042G1363 Punica granatum HOM05D001605 ORTHO05D003014 2.9e-14 82.4 70 64.3
Lsat_1_v5_gn_3_132801 Lactuca sativa HOM05D001605 ORTHO05D003014 3.7e-14 82.0 70 61.4
Carub.0006s2691 Capsella rubella HOM05D001605 ORTHO05D003014 1.1e-13 80.5 70 61.4
Migut.C01050 Erythranthe guttata HOM05D001605 ORTHO05D003014 1.4e-13 80.1 62 67.7
MBI04_g13672_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D003014 1.4e-13 80.1 71 62.0
FAN27G0275 Fragaria x ananassa HOM05D001605 ORTHO05D003014 1.9e-13 79.7 69 66.7
unitig_748.g7696 Utricularia gibba HOM05D001605 ORTHO05D003014 1.9e-13 79.7 70 60.0
CDE06G0035 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 3.2e-13 79.0 52 73.1
CDE07G1401 Ceratophyllum demersum HOM05D001605 ORTHO05D003014 3.2e-13 79.0 52 73.1
RcHm_v2.0_Chr6g0277331 Rosa chinensis HOM05D001605 ORTHO05D003014 3.2e-13 79.0 69 60.9
FvH4_2g14770 Fragaria vesca HOM05D001605 ORTHO05D003014 4.1e-13 78.6 66 63.6
FAN15G1258 Fragaria x ananassa HOM05D001605 ORTHO05D003014 4.1e-13 78.6 66 63.6
FAN20G0370 Fragaria x ananassa HOM05D001605 ORTHO05D003014 4.1e-13 78.6 66 63.6
FAN24G3135 Fragaria x ananassa HOM05D001605 ORTHO05D003014 4.1e-13 78.6 66 63.6
MD10G1012900 Malus domestica HOM05D001605 ORTHO05D003014 5.4e-13 78.2 72 52.8
HanXRQChr04g0125191 Helianthus annuus HOM05D001605 ORTHO05D003014 9.2e-13 77.4 70 58.6
Zm00001eb278890 Zea mays HOM05D001605 ORTHO05D003014 1.2e-12 77.0 72 52.8
Zm00001eb373500 Zea mays HOM05D001605 ORTHO05D003014 1.2e-12 77.0 72 52.8
AL6G42110 Arabidopsis lyrata HOM05D001605 ORTHO05D003014 2.7e-12 75.9 70 61.4
Mapoly0027s0102 Marchantia polymorpha HOM05D001605 ORTHO05D003014 2.7e-12 75.9 71 56.3
Sp6g09600 Schrenkiella parvula HOM05D001605 ORTHO05D003014 2.7e-12 75.9 71 60.6
HPP92_021877 Vanilla planifolia HOM05D001605 ORTHO05D003014 2.7e-12 75.9 70 57.1
BcaB01g01341 Brassica carinata HOM05D001605 ORTHO05D003014 3.5e-12 75.5 71 60.6
Prupe.2G047200 Prunus persica HOM05D001605 ORTHO05D003014 1.0e-11 73.9 78 64.1
Ca_07427_v3 Cicer arietinum L. HOM05D001605 ORTHO05D003014 1.7e-11 73.2 72 56.9
TPR.G18764 Trifolium pratense HOM05D001605 ORTHO05D003014 6.6e-11 71.2 71 53.5
DCAR_001109 Daucus carota HOM05D001605 ORTHO05D003014 1.1e-10 70.5 70 51.4
Lalb_Chr08g0240791 Lupinus albus HOM05D001605 ORTHO05D003014 1.1e-10 70.5 70 55.7
Sc26g0002740 Simmondsia chinensis HOM05D001605 ORTHO05D003014 1.5e-10 70.1 70 58.6
Lj1g0017948 Lotus japonicus HOM05D001605 ORTHO05D003014 1.9e-10 69.7 70 51.4
Ca_16648_v3 Cicer arietinum L. HOM05D001605 ORTHO05D003014 2.5e-10 69.3 69 52.2
Cc09_g02810 Coffea canephora HOM05D001605 ORTHO05D003014 3.3e-10 68.9 71 52.1
Lalb_Chr11g0066411 Lupinus albus HOM05D001605 ORTHO05D003014 3.3e-10 68.9 70 55.7
Hund26786 Selenicereus undatus HOM05D001605 ORTHO05D003014 3.3e-10 68.9 72 48.6
Lalb_Chr23g0271331 Lupinus albus HOM05D001605 ORTHO05D003014 7.3e-10 67.8 71 57.7
Psat5g080840 Pisum sativum HOM05D001605 ORTHO05D003014 1.6e-09 66.6 71 53.5
CAN.G1045.24 Capsicum annuum HOM05D001605 ORTHO05D003014 2.1e-09 66.2 66 53.0
arahy.Tifrunner.gnm1.ann1.SUKE0C Arachis hypogaea HOM05D001605 ORTHO05D003014 1.4e-08 63.5 70 54.3
Medtr3g089910 Medicago truncatula HOM05D001605 ORTHO05D003014 1.8e-08 63.2 71 53.5
Thhalv10028382m.g Eutrema salsugineum HOM05D001605 ORTHO05D003014 5.2e-08 61.6 71 53.5
arahy.Tifrunner.gnm1.ann1.XKFQ8F Arachis hypogaea HOM05D001605 ORTHO05D003014 6.8e-08 61.2 71 52.1
MSTRG.110 Avicennia marina HOM05D001605 ORTHO05D003014 6.8e-08 61.2 55 54.5
AT4G08350 Arabidopsis thaliana HOM05D001605 ORTHO05D003014 2.0e-07 59.7 70 48.6
BcaC01g04775 Brassica carinata HOM05D001605 ORTHO05D003014 2.6e-07 59.3 70 52.9
A03p27980 Brassica napus HOM05D001605 ORTHO05D003014 2.6e-07 59.3 70 52.9
C03p33860 Brassica napus HOM05D001605 ORTHO05D003014 2.6e-07 59.3 70 52.9
BolC3t15701H Brassica oleracea HOM05D001605 ORTHO05D003014 2.6e-07 59.3 70 52.9
BraA03t12015Z Brassica rapa HOM05D001605 ORTHO05D003014 2.6e-07 59.3 70 52.9
Glyma.06G122500 Glycine max HOM05D001605 ORTHO05D003014 5.8e-07 58.2 55 58.2
Pp3c16_360 Physcomitrium patens HOM05D001605 ORTHO05D003014 5.8e-07 58.2 71 52.1
SEGI_08368 Sequoiadendron giganteum HOM05D001605 ORTHO05D003014 5.8e-07 58.2 72 47.2
BcaB01g02866 Brassica carinata HOM05D001605 ORTHO05D003014 7.6e-07 57.8 69 52.2
Pp3c25_8110 Physcomitrium patens HOM05D001605 ORTHO05D003014 9.9e-07 57.4 71 50.7
Thecc.01G128900 Theobroma cacao HOM05D001605 ORTHO05D003014 9.9e-07 57.4 74 48.6
PSO541G1315 Papaver somniferum HOM05D001605 ORTHO05D003014 3.8e-06 55.5 71 45.1
PSO675G8813 Papaver somniferum HOM05D001605 ORTHO05D003014 3.8e-06 55.5 71 45.1
AagrBONN_evm.TU.Sc2ySwM_369.275 Anthoceros agrestis HOM05D001605 ORTHO05D003014 4.9e-06 55.1 71 45.1
Nitab4.5_0000445g0080 Nicotiana tabacum HOM05D001605 ORTHO05D003014 4.9e-06 55.1 81 44.4
Glyma.04G240900 Glycine max HOM05D001605 ORTHO05D003014 6.4e-06 54.7 48 62.5


User provided reference genes

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