Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 3.6e-118 428.3 226 100.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.2e-50 202.2 193 60.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 7.9e-49 198.0 169 65.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-48 196.8 162 66.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.9e-48 195.7 166 64.5
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.9e-47 193.4 169 64.5
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.5e-47 193.0 175 62.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.5e-47 193.0 176 63.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 7.4e-47 191.4 190 58.9
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 7.4e-47 191.4 190 57.9
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 9.7e-47 191.0 174 62.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.6e-46 190.3 165 64.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.6e-46 190.3 169 63.9
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.2e-46 189.9 176 62.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.7e-46 189.1 176 62.5
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 3.7e-46 189.1 169 62.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.7e-46 189.1 169 62.1
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 8.2e-46 188.0 165 63.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.1e-45 187.6 174 62.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-45 187.2 199 60.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.1e-45 186.0 165 63.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.3e-45 185.3 164 63.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.0e-45 184.5 169 62.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.2e-44 184.1 169 62.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.0e-44 183.3 163 62.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 3.4e-44 182.6 168 63.1
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.9e-44 181.8 165 63.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.9e-44 181.8 165 63.0
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.7e-44 181.4 192 57.8
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.0e-43 181.0 170 61.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.0e-43 181.0 172 61.6
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.7e-43 180.3 172 61.6
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.7e-43 180.3 172 61.6
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.7e-43 180.3 168 60.1
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.7e-43 180.3 192 56.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.7e-43 180.3 190 56.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.2e-43 179.9 164 62.8
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.2e-43 179.9 166 60.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.2e-43 179.9 166 60.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.9e-43 179.5 173 60.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 3.8e-43 179.1 164 58.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.8e-43 179.1 166 60.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 5.0e-43 178.7 161 61.5
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.0e-43 178.7 169 58.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 8.5e-43 177.9 169 61.5
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 8.5e-43 177.9 175 58.9
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.1e-42 177.6 156 62.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-42 177.2 199 53.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-42 177.2 170 61.2
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.9e-42 176.8 166 60.8
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.9e-42 176.8 189 56.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.5e-42 176.4 168 61.3
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.2e-42 176.0 168 59.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.2e-42 176.0 167 61.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.2e-42 176.0 167 61.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.2e-42 176.0 168 61.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.2e-42 176.0 188 56.4
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 5.5e-42 175.3 162 62.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.6e-41 173.7 169 58.6
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.6e-41 173.7 163 60.1
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.6e-41 173.7 164 60.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.1e-41 173.3 174 58.6
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.1e-41 173.3 169 58.6
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-41 172.9 167 61.1
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.7e-41 172.9 162 61.1
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.7e-41 172.9 168 58.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.7e-41 172.9 168 58.9
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.7e-41 172.9 168 58.9
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.7e-41 172.9 165 60.0
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-41 172.6 168 58.3
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-41 172.6 168 58.3
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.6e-41 172.6 170 60.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 6.1e-41 171.8 167 59.9
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 6.1e-41 171.8 152 62.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 6.1e-41 171.8 169 59.2
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 7.9e-41 171.4 166 59.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 7.9e-41 171.4 166 59.6
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 7.9e-41 171.4 166 59.6
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 7.9e-41 171.4 166 60.2
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 7.9e-41 171.4 152 61.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.0e-40 171.0 193 55.4
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.0e-40 171.0 194 55.2
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-40 170.6 147 63.3
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-40 170.2 166 59.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.8e-40 170.2 166 59.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.0e-40 169.5 154 61.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.0e-40 169.5 154 61.0
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.0e-40 169.5 157 62.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 5.1e-40 168.7 152 62.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.7e-40 168.3 167 59.3
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 6.7e-40 168.3 159 61.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 6.7e-40 168.3 159 61.0
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.8e-40 167.9 151 62.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.8e-40 167.9 151 62.3
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 8.8e-40 167.9 167 59.3
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 8.8e-40 167.9 151 62.3
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.1e-39 167.5 167 59.3
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-39 167.5 166 58.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.1e-39 167.5 168 58.3
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.1e-39 167.5 169 56.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-39 167.5 151 61.6
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.5e-39 167.2 179 56.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.5e-39 167.2 178 55.6
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 2.0e-39 166.8 163 60.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 2.0e-39 166.8 151 60.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.3e-39 166.0 150 62.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.3e-39 166.0 189 54.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.3e-39 166.0 189 54.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 4.3e-39 165.6 152 62.5
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.7e-39 165.2 164 56.7
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 7.4e-39 164.9 159 59.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.4e-39 164.9 164 56.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.7e-39 164.5 150 61.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.7e-39 164.5 159 59.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 9.7e-39 164.5 159 59.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.7e-38 163.7 156 59.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.8e-38 162.9 147 61.9
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 3.7e-38 162.5 147 62.6
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.7e-38 162.5 159 59.1
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 4.8e-38 162.2 150 61.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 6.3e-38 161.8 162 58.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 6.3e-38 161.8 145 62.8
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 8.2e-38 161.4 150 60.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.8e-37 160.2 160 58.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.8e-37 160.2 149 61.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.4e-37 159.8 153 59.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.4e-37 159.8 153 59.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.3e-37 158.7 153 58.8
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 5.3e-37 158.7 151 59.6
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.6e-36 156.4 152 57.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 4.5e-36 155.6 147 59.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.8e-35 152.5 143 60.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.5e-35 151.8 177 52.5
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.1e-34 151.0 194 46.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-33 147.5 140 60.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.1e-33 146.7 164 51.8
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.7e-33 146.4 163 52.1
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.4e-32 144.1 141 58.9
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.1e-29 134.4 135 57.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.4e-29 134.0 130 58.5
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.8e-29 133.7 162 49.4
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.4e-29 133.3 157 49.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.1e-26 124.4 141 53.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-26 124.0 77 75.3
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-25 120.6 78 74.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.1e-25 120.2 148 45.3
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.7e-25 119.8 81 72.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 8.8e-24 114.8 136 52.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-23 114.0 139 51.8
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-23 114.0 164 44.5
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.4e-23 112.5 164 44.5
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-23 112.1 163 44.2
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-23 112.1 163 44.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-21 107.5 121 52.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 9.1e-21 104.8 105 57.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.2e-20 104.4 110 57.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 7.7e-20 101.7 69 71.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.8e-13 80.5 40 95.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.0e-12 77.0 49 75.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-12 75.9 95 51.6
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-07 60.8 81 53.1
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.4e-07 59.3 44 70.5
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.3e-06 55.5 47 68.1


User provided reference genes

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