Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 0.0e+00 2383.6 1198 100.0
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 0.0e+00 1706.4 1218 72.2
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 0.0e+00 1650.6 1230 69.5
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 0.0e+00 1618.6 1188 71.3
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 0.0e+00 1549.3 1218 66.6
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 0.0e+00 1541.9 1215 65.3
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 0.0e+00 1536.9 1230 64.9
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 0.0e+00 1535.8 1214 64.8
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 0.0e+00 1531.5 1291 64.4
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 0.0e+00 1529.6 1234 64.9
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 0.0e+00 1528.1 1219 65.3
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 0.0e+00 1523.8 1210 64.3
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 0.0e+00 1515.7 1215 64.0
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 0.0e+00 1506.5 1209 64.8
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 0.0e+00 1505.3 1213 63.4
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 0.0e+00 1493.0 1215 63.0
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 0.0e+00 1490.3 1213 62.8
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 0.0e+00 1488.8 1198 63.5
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 0.0e+00 1488.4 1222 63.0
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 0.0e+00 1472.6 1210 63.3
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 0.0e+00 1461.8 1216 62.5
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 0.0e+00 1449.5 1308 59.3
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 0.0e+00 1442.2 1211 62.3
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 0.0e+00 1442.2 1211 62.3
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 0.0e+00 1438.3 1211 62.3
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 0.0e+00 1436.0 1217 61.1
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 0.0e+00 1420.6 1223 60.4
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 0.0e+00 1419.8 1200 62.2
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 0.0e+00 1417.5 1272 59.9
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 0.0e+00 1414.1 1238 60.1
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 0.0e+00 1412.5 1214 60.0
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 0.0e+00 1392.5 1214 60.9
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 0.0e+00 1391.3 1223 59.5
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 0.0e+00 1390.2 1211 60.5
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 0.0e+00 1389.8 1005 69.2
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 0.0e+00 1386.7 1144 63.4
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 0.0e+00 1380.2 1208 60.0
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 0.0e+00 1380.2 1210 60.0
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 0.0e+00 1379.0 1207 60.5
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 0.0e+00 1379.0 1229 59.9
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 0.0e+00 1377.1 1207 59.9
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 0.0e+00 1375.5 1227 59.2
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 0.0e+00 1371.7 1208 59.4
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 0.0e+00 1370.5 1210 59.2
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 0.0e+00 1359.0 1218 58.8
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 0.0e+00 1358.6 1228 59.0
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 0.0e+00 1357.0 1215 58.8
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 0.0e+00 1355.9 1150 62.1
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 0.0e+00 1349.7 1228 58.6
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 0.0e+00 1342.0 1224 58.5
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 0.0e+00 1342.0 1215 58.0
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 0.0e+00 1328.9 1227 57.6
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 0.0e+00 1327.4 1201 58.0
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 0.0e+00 1326.6 1265 56.7
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 0.0e+00 1325.1 1209 57.7
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 0.0e+00 1322.8 1233 58.5
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 0.0e+00 1308.9 1232 58.1
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 0.0e+00 1306.2 1243 57.4
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 0.0e+00 1302.7 1213 57.9
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 0.0e+00 1296.2 1177 57.4
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 0.0e+00 1293.1 1232 57.5
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 0.0e+00 1271.1 1286 55.5
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 0.0e+00 1266.1 858 74.2
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 0.0e+00 1253.0 1195 55.5
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 0.0e+00 1251.1 1230 56.0
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 0.0e+00 1249.6 1183 56.1
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 0.0e+00 1249.2 1195 55.6
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 0.0e+00 1244.6 1203 54.9
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 0.0e+00 1239.6 1194 58.5
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 0.0e+00 1238.0 1196 55.4
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 0.0e+00 1235.7 1184 55.7
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 0.0e+00 1227.6 1209 54.8
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 0.0e+00 1227.2 1209 54.7
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 0.0e+00 1216.8 1208 54.5
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 0.0e+00 1216.1 1206 54.3
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 0.0e+00 1203.0 987 62.9
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 0.0e+00 1193.7 1207 54.2
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 0.0e+00 1190.6 963 63.6
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 0.0e+00 1168.7 1388 50.2
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 0.0e+00 1151.0 1181 53.9
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 0.0e+00 1146.7 913 62.9
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 3.3e-311 1072.0 841 62.3
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 3.1e-309 1065.4 1128 52.6
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 1.7e-304 1049.7 674 75.5
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 3.8e-299 1031.9 1149 47.6
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 1.4e-293 1013.4 840 62.9
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 2.6e-292 1009.2 1236 46.0
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 9.6e-287 990.7 911 58.4
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 4.9e-283 978.4 841 57.0
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 7.2e-266 921.4 503 88.1
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 8.0e-257 891.3 863 52.8
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 5.5e-250 868.6 655 65.2
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 7.0e-245 851.7 1016 45.7
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 4.4e-239 832.4 498 78.5
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 3.7e-222 776.2 449 84.0
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 1.7e-190 671.0 912 41.9
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.4e-184 650.6 793 50.7
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.4e-160 571.6 312 88.1
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 7.4e-154 549.3 386 66.6
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.7e-150 538.1 613 49.9
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 2.3e-147 527.7 842 40.6
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 6.7e-147 526.2 1026 34.9
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 7.0e-144 516.2 452 58.8
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 2.2e-126 458.0 418 60.5
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 6.6e-118 429.9 1466 25.9
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 4.0e-115 420.6 833 31.7
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 5.4e-112 410.2 812 32.3
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 4.5e-111 407.1 290 70.7
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.2e-108 399.1 830 32.2
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.2e-108 399.1 830 32.2
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.4e-107 395.6 218 88.5
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.5e-106 392.1 254 74.8
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 8.9e-83 313.2 858 29.4
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 5.1e-78 297.4 413 42.4
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 4.6e-63 247.7 155 71.6
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 1.9e-56 225.7 161 69.6
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 4.2e-56 224.6 229 55.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 2.3e-54 218.8 419 35.8
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 1.6e-52 212.6 286 47.2
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 1.9e-48 199.1 457 33.0
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 6.1e-47 194.1 108 77.8
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 4.5e-42 177.9 694 22.9
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 2.9e-41 175.3 155 61.9
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 5.7e-37 161.0 97 79.4
QL01p024738 Quercus lobata HOM05D005460 ORTHO05D008059 1.8e-35 156.0 103 78.6
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 5.1e-30 137.9 244 37.7
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 8.8e-30 137.1 120 60.8
Ca_02785_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 8.2e-28 130.6 94 68.1
Hma1.2p1_3034F.1_g331880 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 7.7e-26 124.0 220 40.5
Psat0s3496g0160 Pisum sativum HOM05D001876 ORTHO05D002002 1.3e-25 123.2 98 63.3
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 8.5e-25 120.6 166 47.6
Lsat_1_v5_gn_2_72741 Lactuca sativa HOM05D005460 ORTHO05D000550 2.2e-20 105.9 286 29.4
Lsat_1_v5_gn_2_72781 Lactuca sativa HOM05D005460 ORTHO05D000550 2.4e-19 102.4 266 31.2
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 2.0e-18 99.4 193 34.2
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 5.0e-17 94.7 59 74.6
Actinidia10444 Actinidia chinensis HOM05D005460 ORTHO05D056868 4.7e-15 88.2 83 55.4
SEGI_23280 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 8.8e-14 84.0 65 60.0
MELO3C011889.2 Cucumis melo HOM05D000246 ORTHO05D008363 4.8e-12 78.2 391 23.8
Potri.012G063000 Populus trichocarpa HOM05D005460 ORTHO05D018279 6.3e-12 77.8 74 50.0
Gorai.002G190800 Gossypium raimondii HOM05D000246 ORTHO05D008363 4.1e-11 75.1 425 23.8
CsaV3_5G030500 Cucumis sativus L. HOM05D000246 ORTHO05D008363 5.4e-11 74.7 436 22.9
Cre03.g178950 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D002923 2.2e-09 69.3 412 22.8
PSO135G0853 Papaver somniferum HOM05D000246 ORTHO05D002923 2.1e-07 62.8 122 30.3
Carub.0007s0451 Capsella rubella HOM05D000246 ORTHO05D002923 1.0e-06 60.5 299 23.4
Zm00001eb257010 Zea mays HOM05D000246 ORTHO05D002923 1.0e-06 60.5 127 29.9
GSVIVG01010342001 Vitis vinifera HOM05D000246 ORTHO05D008363 1.8e-06 59.7 222 27.5
Ca_02198_v3 Cicer arietinum L. HOM05D000246 ORTHO05D002923 2.3e-06 59.3 116 30.2
CARHR244080 Cardamine hirsuta HOM05D000246 ORTHO05D002923 5.2e-06 58.2 284 22.9
Migut.K00583 Erythranthe guttata HOM05D000246 ORTHO05D002923 5.2e-06 58.2 116 31.9
PSO724G0110 Papaver somniferum HOM05D000246 ORTHO05D002923 5.2e-06 58.2 98 30.6
Sed0011036 Sechium edule HOM05D000246 ORTHO05D002923 5.2e-06 58.2 98 31.6
Lsat_1_v5_gn_8_85621 Lactuca sativa HOM05D000246 ORTHO05D002923 6.8e-06 57.8 101 31.7


User provided reference genes

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