Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.8e-102 374.8 276 100.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.1e-84 317.4 281 80.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.9e-82 308.9 284 78.9
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.2e-80 303.9 162 94.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.1e-80 303.1 281 78.6
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 6.2e-80 301.6 280 77.1
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.5e-78 297.0 277 72.6
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.4e-78 295.8 288 72.9
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 9.9e-78 294.3 165 90.9
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.9e-77 292.7 287 74.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 3.2e-76 289.3 278 77.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.2e-76 288.9 164 90.2
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 5.4e-76 288.5 163 90.8
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 7.1e-76 288.1 237 67.1
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.6e-75 287.0 156 92.9
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.7e-75 286.2 163 90.8
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 3.5e-75 285.8 163 90.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.6e-75 285.4 155 92.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.6e-75 285.4 277 75.5
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.6e-75 285.4 276 71.0
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.3e-74 283.9 163 89.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-74 283.9 276 70.7
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-74 283.1 165 89.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-74 283.1 165 89.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.0e-74 282.7 165 89.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 3.0e-74 282.7 165 89.1
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.9e-74 282.3 162 89.5
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.9e-74 282.3 288 74.7
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.1e-74 282.0 164 90.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.1e-74 282.0 283 71.7
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 8.7e-74 281.2 279 68.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.9e-73 280.0 163 92.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.9e-73 280.0 165 88.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.9e-73 280.0 161 89.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.3e-73 278.9 296 69.3
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 4.3e-73 278.9 165 88.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.6e-73 278.5 273 74.4
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.6e-73 278.5 165 88.5
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.3e-73 278.1 164 87.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.3e-73 278.1 290 74.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 7.3e-73 278.1 164 87.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 7.3e-73 278.1 278 73.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.6e-73 277.7 164 89.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 9.6e-73 277.7 153 92.8
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.3e-72 277.3 288 69.4
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.3e-72 277.3 287 76.3
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.8e-72 276.2 164 87.2
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 8.1e-72 274.6 163 89.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 8.1e-72 274.6 279 74.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.4e-71 273.9 282 69.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.8e-71 273.5 159 88.7
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.4e-71 273.1 288 67.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.4e-71 273.1 152 92.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.4e-71 273.1 291 77.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.0e-71 272.3 147 93.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 6.9e-71 271.6 164 87.2
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.9e-71 271.6 164 87.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.0e-71 271.2 151 92.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 9.0e-71 271.2 164 86.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 9.0e-71 271.2 164 86.6
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 9.0e-71 271.2 164 86.6
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 9.0e-71 271.2 151 92.1
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-70 270.8 164 87.2
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.2e-70 270.8 165 86.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.2e-70 270.8 166 86.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.2e-70 270.8 166 86.7
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-70 270.4 152 90.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-70 270.4 152 90.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.5e-70 270.4 280 80.0
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.5e-70 270.4 163 85.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.0e-70 270.0 172 83.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.6e-70 269.6 288 68.1
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 2.6e-70 269.6 281 77.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.4e-70 269.2 165 85.5
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.4e-70 269.2 159 88.7
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-70 269.2 159 88.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.4e-70 269.2 150 92.0
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.4e-70 269.2 288 67.7
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 3.4e-70 269.2 281 76.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.5e-70 268.9 151 91.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 4.5e-70 268.9 165 86.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.5e-70 268.9 151 91.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.8e-70 268.5 151 91.4
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 5.8e-70 268.5 164 86.0
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 5.8e-70 268.5 152 91.4
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 9.9e-70 267.7 150 91.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.2e-69 266.5 152 92.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.2e-69 266.5 152 92.1
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 6.4e-69 265.0 167 82.6
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 84.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-68 263.8 164 84.1
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.4e-68 263.8 162 85.2
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 4.2e-68 262.3 164 84.8
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.4e-68 261.9 281 63.3
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 5.4e-68 261.9 238 76.5
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 9.3e-68 261.2 150 89.3
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-67 260.8 282 66.7
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.2e-67 260.8 145 91.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.6e-67 260.4 158 86.1
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.7e-67 259.6 162 84.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.7e-67 259.6 169 81.7
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.0e-66 257.7 166 83.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 305 67.9
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.3e-66 256.5 242 74.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.0e-66 256.1 151 88.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 3.9e-66 255.8 147 91.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.7e-66 254.6 165 81.2
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 8.7e-66 254.6 165 81.2
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.3e-65 252.7 162 82.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.6e-65 251.9 152 84.9
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.6e-65 251.9 276 63.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 153 85.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 153 85.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-64 250.8 163 81.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.6e-64 250.4 280 67.1
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.6e-64 250.4 280 67.1
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.7e-64 249.2 284 73.9
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 4.8e-64 248.8 165 80.0
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 8.1e-64 248.1 153 83.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.4e-63 247.3 152 84.9
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.4e-63 246.5 200 68.5
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.0e-63 244.6 157 83.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.5e-62 242.3 272 65.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.3e-61 240.7 140 87.9
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.3e-61 240.7 156 81.4
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-60 237.7 275 66.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.1e-60 237.7 275 66.2
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.1e-60 237.7 149 84.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.4e-60 236.5 143 85.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.7e-59 233.0 148 79.7
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.5e-59 232.6 151 81.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 4.6e-59 232.3 130 92.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 6.0e-59 231.9 299 64.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.9e-59 231.5 164 75.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.9e-58 229.2 141 84.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.9e-57 226.9 161 75.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.6e-54 216.5 122 91.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.4e-54 216.1 135 83.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.5e-52 209.9 140 80.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 6.7e-50 201.8 163 68.7
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-49 200.7 172 68.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-49 200.3 134 80.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-49 199.1 134 79.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 9.7e-49 198.0 159 64.8
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 5.3e-47 192.2 162 66.7
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.0e-45 188.0 109 88.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.5e-45 184.9 164 61.6
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.1e-44 184.5 151 65.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.1e-43 178.7 123 74.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.8e-37 159.5 94 87.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.0e-34 151.4 94 80.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.0e-33 147.1 104 75.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 163 54.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 163 54.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 163 54.6
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.7e-33 144.8 163 54.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 8.0e-27 125.2 137 51.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.7e-21 107.5 139 48.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 8.0e-19 98.6 53 90.6
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.5e-14 83.2 56 76.8
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.5e-14 82.8 58 74.1
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.7e-13 80.9 66 66.7
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.8e-13 79.7 50 80.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 1.3e-08 64.7 67 58.2
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.7e-06 55.5 38 73.7


User provided reference genes

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