Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.0e-142 507.7 244 100.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-117 426.0 243 82.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.6e-117 423.7 244 82.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.6e-114 415.6 245 81.6
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.4e-114 415.2 244 79.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.9e-113 412.1 241 82.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.2e-112 408.7 243 80.2
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 9.3e-112 407.1 241 80.1
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-109 400.2 245 80.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.2e-108 394.4 244 77.0
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 8.4e-105 384.0 245 75.1
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 5.4e-104 381.3 244 72.5
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 4.6e-103 378.3 244 74.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.6e-103 378.3 244 71.7
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.0e-103 377.9 242 72.3
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.0e-102 377.1 244 73.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.5e-101 373.2 243 74.9
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.5e-101 373.2 244 75.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.1e-100 369.4 238 72.7
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.8e-100 368.2 236 74.6
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 4.8e-100 368.2 243 73.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.1e-99 365.5 241 67.6
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.0e-99 365.2 235 73.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.0e-98 362.8 237 72.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.0e-98 362.8 244 70.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.9e-98 360.5 240 72.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.3e-97 360.1 243 70.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.3e-97 360.1 242 69.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 2.9e-97 359.0 243 68.3
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 6.4e-97 357.8 243 70.0
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 6.4e-97 357.8 243 69.1
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.4e-97 357.5 243 69.1
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.1e-96 357.1 242 69.4
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.2e-96 355.1 243 68.7
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.1e-96 354.4 243 68.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-95 352.4 235 71.5
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.6e-95 351.7 239 69.5
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.6e-95 351.7 244 68.9
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.3e-94 350.1 238 69.3
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.3e-94 349.4 235 69.4
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 6.7e-94 347.8 237 70.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.7e-94 347.8 235 71.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 6.7e-94 347.8 233 71.2
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 4.3e-93 345.1 233 70.4
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 9.6e-93 344.0 240 68.3
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.3e-92 343.6 246 66.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 6.2e-92 341.3 235 68.9
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-91 340.5 233 70.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.8e-91 339.7 246 67.1
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.1e-91 339.0 236 69.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.1e-91 339.0 236 69.1
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.0e-91 338.6 243 67.5
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.0e-91 338.6 235 66.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.5e-90 336.7 243 65.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 2.0e-90 336.3 238 67.6
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.0e-90 336.3 239 67.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.5e-90 335.1 245 67.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.3e-89 333.6 259 64.9
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.2e-89 332.8 235 68.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.9e-89 332.4 245 66.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.9e-89 331.6 245 66.9
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 6.5e-89 331.3 257 65.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.4e-88 330.1 245 65.7
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-88 329.3 243 64.6
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-88 329.3 243 64.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.3e-88 327.4 245 66.1
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.6e-87 325.1 233 68.2
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 6.0e-87 324.7 244 65.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.8e-86 323.2 245 64.9
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-86 322.8 216 71.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-86 322.0 245 64.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.9e-85 319.7 240 67.1
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.3e-85 318.9 255 64.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.7e-85 318.2 238 64.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.3e-84 317.0 237 67.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.2e-84 316.2 235 62.1
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.8e-84 315.8 241 63.9
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.1e-83 313.9 254 64.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.1e-83 312.4 241 64.7
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 9.0e-83 310.8 248 62.5
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.0e-83 310.8 243 60.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-82 310.5 243 63.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.2e-82 310.5 241 65.6
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.6e-82 309.3 236 62.3
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.6e-82 309.3 241 64.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.5e-82 308.5 237 62.9
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.9e-82 308.1 236 63.1
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.9e-82 308.1 236 63.1
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.3e-81 307.0 241 64.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.2e-81 306.2 248 61.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-81 306.2 248 61.7
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.9e-81 305.8 243 63.4
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.9e-80 303.1 242 63.2
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.9e-80 303.1 242 63.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.9e-80 303.1 224 66.5
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.5e-80 302.8 216 66.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.2e-80 302.0 236 61.4
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 4.2e-80 302.0 205 69.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.2e-80 302.0 236 60.2
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 9.4e-80 300.8 245 62.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-79 300.4 236 63.6
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 6.1e-79 298.1 240 61.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.0e-78 297.4 237 61.2
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.0e-78 297.4 228 60.5
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-78 297.0 236 61.4
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 5.1e-78 295.0 244 60.7
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.3e-77 292.0 237 60.8
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.3e-77 292.0 208 66.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.7e-77 290.8 243 59.7
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 9.7e-77 290.8 230 60.9
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.2e-76 289.7 237 59.9
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.2e-76 289.7 234 62.4
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.2e-76 289.7 240 61.7
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.8e-76 289.3 237 60.8
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.1e-75 287.3 237 60.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.4e-75 287.0 242 59.9
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.8e-75 286.6 242 59.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.4e-75 286.2 249 57.8
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.1e-75 285.4 208 65.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 5.3e-75 285.0 240 59.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 6.9e-75 284.6 237 59.9
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.9e-75 284.6 242 59.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.2e-74 283.9 236 59.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.2e-74 283.9 236 59.7
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 237 59.5
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.4e-74 282.3 239 57.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.9e-74 281.6 237 58.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.9e-74 281.6 216 61.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.3e-73 280.4 239 56.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-73 279.3 244 60.2
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 6.5e-73 278.1 237 59.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 6.5e-73 278.1 237 59.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.2e-72 274.6 236 57.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.2e-72 274.6 237 57.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.7e-71 272.7 237 58.2
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.8e-70 270.0 237 56.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.4e-69 265.4 238 57.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 9.7e-69 264.2 224 58.9
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 2.2e-68 263.1 258 54.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.8e-68 262.7 235 56.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.8e-68 262.7 169 72.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-67 260.8 235 57.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.1e-67 260.8 235 54.9
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.5e-66 255.4 231 53.7
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.5e-64 249.6 209 58.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-64 249.6 198 60.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.2e-64 249.2 238 53.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.6e-63 246.9 223 56.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.3e-62 243.0 242 50.8
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.7e-61 238.4 231 51.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.7e-60 235.7 239 52.7
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.4e-59 233.0 163 68.1
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.0e-59 231.5 157 71.3
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.7e-57 226.9 242 49.2
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-55 219.9 243 49.8
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 2.1e-55 219.9 185 62.2
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.7e-55 219.5 157 66.9
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 7.5e-53 211.5 163 60.7
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-50 203.4 200 54.5
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.1e-48 197.6 269 40.9
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.0e-46 191.0 262 38.9
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 6.8e-46 188.3 129 67.4
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.7e-44 183.7 208 49.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-40 171.0 191 49.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.2e-36 156.8 116 64.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.2e-36 156.8 101 72.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.2e-34 151.0 152 52.0
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-31 138.7 107 61.7
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 8.0e-31 138.3 156 48.1
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.4e-30 137.5 120 58.3
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 3.4e-29 132.9 118 55.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.3e-28 128.3 93 66.7
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.3e-24 116.3 166 38.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.6e-23 114.0 73 74.0
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 2.0e-21 107.1 89 58.4
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 7.5e-21 105.1 88 54.5
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 4.9e-20 102.4 132 43.9
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 6.4e-20 102.1 190 31.1
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.6e-17 91.7 80 53.8
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.2e-15 87.8 96 46.9
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.3e-12 77.8 173 27.7
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 4.9e-12 75.9 54 68.5
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.3e-09 67.0 170 27.6


User provided reference genes

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