Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.6e-208 729.2 367 100.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 3.8e-202 708.0 367 96.5
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 4.7e-160 568.2 378 76.7
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.5e-158 563.1 367 76.6
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 9.8e-158 560.5 368 76.9
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 4.9e-157 558.1 377 75.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 9.2e-156 553.9 368 75.8
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.7e-155 552.4 367 75.5
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 6.0e-155 551.2 378 74.3
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.0e-154 550.4 379 74.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 2.3e-154 549.3 367 75.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.0e-154 548.9 378 73.8
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 5.1e-154 548.1 367 75.5
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 5.1e-154 548.1 367 76.0
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 3.3e-153 545.4 380 74.7
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.2e-152 543.5 367 74.1
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 1.2e-152 543.5 369 76.7
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.1e-152 542.7 383 73.1
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 1.1e-151 540.4 367 74.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.1e-151 540.4 369 75.6
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.4e-151 540.0 367 73.6
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.8e-151 539.7 381 72.2
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.3e-151 539.3 367 74.1
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.1e-151 538.9 370 75.1
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 3.1e-151 538.9 373 72.7
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 5.2e-151 538.1 374 73.3
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 5.2e-151 538.1 367 74.4
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.2e-150 537.0 367 72.8
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 2.6e-150 535.8 374 73.0
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.4e-150 535.4 370 72.7
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.4e-150 535.4 385 71.2
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 5.8e-150 534.6 367 73.3
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 7.6e-150 534.3 367 74.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 9.9e-150 533.9 381 71.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 2.9e-149 532.3 368 73.4
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 3.8e-149 531.9 379 71.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.9e-149 531.6 379 71.2
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 6.4e-149 531.2 376 73.1
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 6.4e-149 531.2 381 71.1
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 6.4e-149 531.2 373 71.8
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 8.4e-149 530.8 381 70.6
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.9e-148 529.6 369 72.4
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 2.4e-148 529.3 373 71.3
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 2.4e-148 529.3 373 71.3
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 3.2e-148 528.9 385 69.9
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.2e-148 528.9 368 71.5
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-147 526.9 375 72.3
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-147 526.9 375 72.3
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.2e-147 526.9 363 73.6
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.1e-147 526.2 370 72.2
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 7.8e-147 524.2 375 72.0
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.0e-146 523.9 375 72.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.3e-146 523.5 375 72.0
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.0e-146 522.3 373 71.0
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 5.1e-146 521.5 381 70.1
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.1e-146 521.5 374 70.6
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 6.6e-146 521.2 374 70.9
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 6.6e-146 521.2 369 71.3
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 7.3e-145 517.7 367 71.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.2e-144 516.9 388 68.0
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 2.8e-144 515.8 381 69.0
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 2.8e-144 515.8 381 69.0
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.0e-143 511.9 369 71.5
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.9e-143 511.1 394 69.0
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.0e-142 509.6 369 70.7
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.6e-142 509.2 369 70.5
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 7.6e-142 507.7 388 66.0
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.3e-141 506.9 371 71.2
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 6.4e-141 504.6 368 70.1
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 7.1e-140 501.1 374 68.2
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 3.5e-139 498.8 385 68.1
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.3e-138 496.9 391 66.5
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.3e-138 496.9 377 67.6
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.3e-138 496.1 315 80.3
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.3e-138 496.1 390 66.2
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.0e-138 495.7 374 67.9
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 5.1e-138 495.0 391 66.0
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 8.1e-136 487.6 377 66.3
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 8.1e-136 487.6 376 66.0
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 8.1e-136 487.6 368 67.9
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 9.0e-135 484.2 369 67.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 5.8e-134 481.5 369 65.9
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.7e-133 479.9 384 64.1
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 6.4e-133 478.0 371 66.0
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 6.4e-133 478.0 368 66.6
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.4e-133 477.6 387 64.3
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 8.4e-133 477.6 368 64.9
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.4e-132 476.1 364 66.8
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.2e-132 475.7 370 66.5
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 7.1e-132 474.6 370 65.9
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 6.0e-131 471.5 371 65.8
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.3e-130 470.3 368 63.9
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.9e-130 468.8 368 63.9
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 8.7e-130 467.6 379 63.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 8.7e-130 467.6 371 65.0
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.1e-129 467.2 369 65.6
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.5e-129 466.8 368 64.9
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.5e-129 466.8 368 63.9
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.9e-129 466.5 363 65.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 4.3e-129 465.3 371 64.4
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.3e-129 465.3 387 63.3
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.6e-129 464.9 321 73.5
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 9.6e-129 464.2 368 64.1
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 6.2e-128 461.5 368 64.9
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 2.0e-126 456.4 368 62.0
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 3.8e-125 452.2 372 65.1
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.2e-124 449.1 388 60.6
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 7.9e-123 444.5 369 63.4
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 5.1e-122 441.8 368 60.6
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 2.5e-121 439.5 354 66.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.9e-117 426.0 350 63.4
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.5e-116 422.9 360 63.1
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 3.2e-116 422.5 368 58.7
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.3e-112 410.6 395 54.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 2.4e-111 406.4 322 66.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 5.3e-111 405.2 305 70.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.0e-111 404.4 321 65.7
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.7e-109 400.2 370 58.1
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 4.2e-108 395.6 379 57.0
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.0e-102 376.7 273 68.5
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 3.8e-101 372.5 365 53.7
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 1.4e-98 364.0 275 69.1
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.4e-95 354.0 310 57.7
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.5e-78 295.8 199 78.9
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.8e-67 260.0 169 78.7
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 8.0e-67 258.5 386 39.4
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.0e-66 258.1 259 52.1
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 4.0e-66 256.1 266 55.3
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.2e-65 254.6 160 81.2
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 8.6e-61 238.4 234 52.1
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 3.0e-58 229.9 335 44.5
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.7e-54 216.9 326 38.3
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-52 210.3 167 68.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 9.8e-49 198.4 189 54.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.4e-47 193.7 175 61.1
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.9e-45 186.4 229 43.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.6e-45 185.3 175 59.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.9e-37 159.8 158 51.3
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.0e-34 149.8 141 61.7
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 8.9e-34 148.7 141 61.0
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.2e-30 138.3 91 67.0
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.5e-28 130.6 129 57.4
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 6.2e-27 125.9 89 77.5
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 2.0e-25 120.9 114 53.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.1e-20 105.1 81 63.0
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-20 104.8 172 40.7
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.2e-16 90.9 51 82.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 2.2e-16 90.9 51 82.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.1e-15 88.6 94 50.0


User provided reference genes

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