Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.2e-123 446.8 285 100.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 3.7e-120 435.3 285 94.7
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 6.5e-117 424.5 285 93.3
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 5.4e-95 351.7 290 76.9
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.7e-94 349.4 293 78.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.8e-90 336.7 284 83.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.8e-90 336.7 284 83.5
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 3.1e-90 335.9 284 80.3
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.4e-89 332.0 285 82.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 3.7e-88 328.9 295 77.6
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.4e-88 328.2 298 72.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-87 327.0 297 74.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.5e-86 322.4 297 73.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 4.6e-86 322.0 302 73.2
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.0e-86 321.6 285 75.4
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.3e-85 320.5 246 72.4
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.1e-85 318.5 241 80.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.5e-84 317.0 295 72.2
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.6e-84 315.1 292 72.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-83 313.2 298 70.5
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.8e-82 310.1 299 75.6
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.4e-82 309.7 287 72.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.0e-82 308.9 293 73.4
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.2e-82 308.5 289 76.1
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.8e-82 308.1 285 70.9
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.6e-81 306.2 292 72.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.4e-81 305.8 284 75.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.9e-80 302.8 295 71.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-80 302.8 295 71.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.9e-80 302.8 283 78.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 8.4e-80 301.2 203 82.8
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 8.4e-80 301.2 293 72.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.1e-79 298.1 281 78.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.1e-78 296.6 284 76.1
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.1e-78 296.6 167 92.2
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.5e-78 295.8 286 71.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 7.8e-78 294.7 180 86.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 7.8e-78 294.7 296 72.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 7.8e-78 294.7 286 71.7
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.0e-77 294.3 165 92.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.0e-77 294.3 292 69.5
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.3e-77 293.9 292 69.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.3e-77 293.1 302 73.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.9e-77 292.4 296 72.0
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 6.6e-77 291.6 271 75.6
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.6e-77 291.6 287 69.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 8.7e-77 291.2 284 73.6
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.3e-76 288.9 251 72.5
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.3e-76 288.9 265 78.1
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.6e-76 288.5 310 68.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.6e-75 287.0 304 65.5
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 6.2e-75 285.0 183 85.2
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.4e-74 283.9 298 73.5
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.8e-74 283.5 165 89.7
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 2.4e-74 283.1 280 73.6
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.0e-74 282.3 296 70.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 9.0e-74 281.2 280 72.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.2e-73 280.8 170 85.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.5e-73 280.4 173 86.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.6e-73 279.6 183 83.1
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 2.6e-73 279.6 183 83.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 5.8e-73 278.5 184 81.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 5.8e-73 278.5 238 67.6
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.8e-73 278.5 174 85.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 9.9e-73 277.7 184 81.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-72 277.3 176 84.1
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.7e-72 276.9 278 69.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.8e-72 275.8 221 69.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.8e-72 275.8 221 69.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.8e-72 275.8 221 69.7
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 6.4e-72 275.0 215 73.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.4e-72 274.6 179 82.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.1e-71 274.2 153 90.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.1e-71 274.2 280 75.0
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-71 273.9 222 70.3
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-71 273.9 153 89.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.4e-71 273.9 299 68.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.9e-71 273.5 151 92.7
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.9e-71 273.5 283 72.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.9e-71 273.5 151 92.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.4e-71 273.1 170 84.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.2e-71 272.7 179 81.6
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.2e-71 272.3 179 81.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-71 272.3 224 73.2
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 4.2e-71 272.3 204 75.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 4.2e-71 272.3 224 73.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 4.2e-71 272.3 204 75.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.4e-71 271.9 172 83.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 7.1e-71 271.6 150 92.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.3e-71 271.2 151 92.1
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-70 270.8 184 80.4
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.6e-70 270.4 151 90.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.6e-70 270.4 299 61.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 7.8e-70 268.1 167 83.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.3e-69 266.5 178 79.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 2.3e-69 266.5 178 82.0
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.1e-69 265.4 285 71.9
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.1e-69 265.4 265 64.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 6.6e-69 265.0 247 68.0
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 6.6e-69 265.0 289 66.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 6.6e-69 265.0 152 91.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.1e-68 264.2 284 70.8
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.5e-68 263.8 145 92.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.3e-68 261.5 151 90.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 9.6e-68 261.2 259 63.3
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.1e-67 260.0 172 80.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.1e-67 260.0 283 72.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 2.8e-67 259.6 163 82.8
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.6e-67 259.2 297 63.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 4.8e-67 258.8 227 67.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.1e-67 258.1 278 67.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 9.0e-66 254.6 294 65.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 86.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 86.3
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.0e-65 253.4 247 65.6
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.4e-65 252.7 181 77.3
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.5e-65 252.3 283 69.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.3e-64 250.8 281 69.4
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.2e-64 250.0 171 77.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 5.4e-63 245.4 166 78.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-62 243.4 297 64.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-62 243.4 297 64.0
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.3e-61 240.0 151 83.4
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.3e-61 240.0 298 63.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.3e-61 240.0 182 72.0
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.1e-61 238.8 229 68.1
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.1e-60 237.7 296 64.5
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.1e-60 237.7 290 64.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.1e-60 237.7 290 64.1
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.6e-59 233.8 160 80.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.1e-59 233.4 144 83.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 6.2e-59 231.9 221 63.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 8.1e-59 231.5 297 65.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.1e-58 231.1 286 67.5
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.5e-57 227.3 142 82.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 4.9e-56 222.2 230 59.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.8e-53 213.8 149 75.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.8e-53 213.8 294 63.6
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-53 213.8 136 80.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.0e-53 213.0 122 87.7
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.3e-52 209.5 202 61.4
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-50 204.5 144 75.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.3e-48 197.6 247 61.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 6.5e-48 195.3 182 62.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 8.4e-48 194.9 208 61.5
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.1e-47 194.5 160 65.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.5e-47 193.4 169 65.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.5e-44 183.3 152 66.4
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 8.2e-43 178.3 124 75.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 5.5e-39 165.6 193 58.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 4.3e-36 156.0 109 75.2
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.7e-35 152.9 184 54.3
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 6.3e-35 152.1 94 80.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-33 147.9 217 47.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.2e-33 147.9 217 47.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.5e-33 147.5 175 53.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 6.3e-27 125.6 138 52.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.7e-22 110.2 141 51.1
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.1e-18 98.2 53 88.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.2e-15 85.5 67 68.7
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.1e-14 84.0 133 45.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.0e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.4e-13 81.3 50 78.0
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.1e-10 70.1 58 67.2
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 2.5e-07 60.5 67 55.2


User provided reference genes

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