Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.1e-205 718.8 360 100.0
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.6e-199 697.2 360 96.7
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 9.2e-193 676.8 360 91.9
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 8.4e-186 653.7 360 89.7
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 6.7e-143 511.1 361 70.9
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.5e-142 510.0 362 70.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 8.2e-141 504.2 380 67.9
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 2.4e-140 502.7 363 70.0
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 9.1e-140 500.7 362 70.2
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 5.9e-139 498.0 363 68.3
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 5.9e-139 498.0 363 70.2
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.0e-138 497.3 363 70.5
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.9e-138 495.7 364 67.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 6.5e-138 494.6 365 67.7
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 2.5e-137 492.7 364 68.1
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.2e-137 492.3 371 67.4
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 4.2e-137 491.9 362 69.1
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 5.5e-137 491.5 364 67.9
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 9.4e-137 490.7 362 69.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.6e-136 490.0 365 67.1
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.7e-136 489.2 361 68.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.7e-136 489.2 370 67.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.6e-136 488.8 377 67.4
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 3.6e-136 488.8 362 68.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 4.7e-136 488.4 383 66.3
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 8.0e-136 487.6 370 67.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.0e-135 487.3 377 67.4
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 1.4e-135 486.9 362 68.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.4e-135 486.9 371 67.9
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.0e-135 485.7 377 66.3
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 5.2e-135 485.0 362 67.4
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.5e-134 483.4 369 68.3
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.5e-134 483.4 360 67.8
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 1.5e-134 483.4 363 69.1
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 2.6e-134 482.6 371 66.8
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.7e-134 481.5 377 67.1
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 7.4e-134 481.1 362 67.7
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.3e-133 480.3 378 66.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.3e-133 480.3 362 67.4
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.2e-133 479.6 363 67.8
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 2.8e-133 479.2 362 66.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 2.8e-133 479.2 370 66.5
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 6.3e-133 478.0 365 66.3
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.4e-132 476.9 366 65.6
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.4e-132 476.9 366 65.8
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.8e-132 476.5 362 67.1
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 4.1e-132 475.3 366 65.3
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 4.1e-132 475.3 366 66.9
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 2.0e-131 473.0 360 66.9
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.0e-131 473.0 368 65.8
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.0e-131 473.0 365 65.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.6e-131 472.6 385 65.5
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.6e-131 472.6 362 67.7
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 2.6e-131 472.6 362 66.3
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.5e-131 472.2 369 66.4
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 3.5e-131 472.2 383 65.5
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 7.7e-131 471.1 362 64.6
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 7.7e-131 471.1 368 64.1
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 1.3e-130 470.3 371 65.5
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 2.2e-130 469.5 365 64.9
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 2.2e-130 469.5 368 63.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.9e-130 469.2 363 66.1
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 3.8e-130 468.8 377 64.5
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 6.5e-130 468.0 361 64.3
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 6.5e-130 468.0 368 63.6
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 6.5e-130 468.0 368 63.6
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.5e-130 468.0 365 65.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 6.5e-130 468.0 377 64.2
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 8.5e-130 467.6 371 64.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 8.5e-130 467.6 363 65.6
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-129 467.2 368 63.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-129 466.8 364 64.3
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.5e-129 466.8 364 64.3
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.9e-129 466.5 368 64.4
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 7.2e-129 464.5 374 62.8
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 9.4e-129 464.2 381 64.6
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 1.2e-128 463.8 366 65.6
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.6e-128 463.4 365 64.7
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.1e-128 463.0 362 64.9
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 2.1e-128 463.0 365 63.6
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.7e-128 462.6 366 63.9
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 3.6e-128 462.2 360 63.9
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.6e-128 462.2 366 64.5
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 4.7e-128 461.8 374 61.8
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.7e-128 461.8 385 64.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.0e-127 460.7 370 63.2
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-127 460.7 383 61.6
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.0e-127 460.7 384 62.0
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 2.3e-127 459.5 366 64.8
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.0e-127 459.1 382 61.5
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 5.2e-127 458.4 368 62.0
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 6.8e-127 458.0 373 61.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 6.8e-127 458.0 373 63.5
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-126 456.8 368 61.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 2.0e-126 456.4 373 61.9
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.6e-126 456.1 351 65.5
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 9.8e-126 454.1 363 64.5
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.8e-125 451.8 366 61.2
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 6.3e-125 451.4 364 61.5
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 9.1e-124 447.6 395 60.8
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.7e-123 446.0 363 63.1
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.7e-122 443.4 364 61.5
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 5.0e-122 441.8 356 61.8
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 4.1e-116 422.2 364 58.2
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 9.1e-116 421.0 362 59.1
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 7.7e-115 417.9 310 69.7
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.8e-114 415.6 358 59.5
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 7.2e-113 411.4 364 58.8
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 5.2e-111 405.2 379 54.4
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.9e-111 404.4 315 65.7
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-105 387.1 345 57.1
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.5e-105 387.1 308 68.5
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.5e-105 386.3 387 51.7
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 6.1e-104 381.7 347 60.8
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 3.1e-103 379.4 363 55.6
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.8e-103 378.3 318 62.3
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.9e-98 362.5 354 54.0
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.1e-97 360.9 358 52.0
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.4e-95 354.0 307 59.3
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.5e-94 350.5 315 58.7
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.9e-93 346.3 363 54.3
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.4e-92 343.2 369 51.5
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 5.8e-86 322.0 271 60.1
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.4e-79 300.8 196 80.1
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 6.0e-67 258.8 368 40.2
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 3.0e-66 256.5 251 51.8
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 8.7e-66 255.0 155 83.2
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 8.7e-66 255.0 259 53.7
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.5e-65 253.4 161 77.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.9e-57 227.3 330 43.3
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 3.2e-52 209.9 219 50.2
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 5.5e-52 209.1 327 36.1
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.1e-49 201.4 181 54.1
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-48 197.6 160 66.2
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.1e-44 184.9 163 61.3
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.0e-42 178.3 163 60.1
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.8e-34 151.0 229 35.8
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.1e-31 139.8 133 58.6
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 9.1e-31 138.7 133 57.9
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.5e-30 136.3 121 60.3
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.7e-29 134.4 156 40.4
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.4e-28 131.3 81 80.2
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 4.8e-24 116.3 84 70.2
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 6.5e-21 105.9 102 50.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 4.0e-18 96.7 112 43.8
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.8e-16 89.7 51 80.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.8e-16 89.7 51 80.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 9.1e-15 85.5 177 33.9
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 9.4e-12 75.5 90 43.3


User provided reference genes

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