Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1672.5 865 100.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1649.8 862 97.9
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1534.6 865 89.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1330.5 865 75.8
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 866 78.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 866 77.7
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 866 78.2
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1310.8 866 78.3
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1306.2 862 77.8
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1305.4 866 74.4
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1304.7 865 76.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 861 77.9
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1301.6 861 76.2
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1291.2 865 73.1
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1290.4 874 73.1
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1290.0 862 73.9
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1289.2 887 75.5
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1282.3 863 74.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1280.8 865 72.7
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1277.3 866 72.2
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1276.5 865 75.8
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 862 74.4
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 868 72.6
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1268.4 862 72.4
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1268.1 883 71.1
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1267.3 899 70.3
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1266.5 868 72.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1265.0 862 72.0
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1263.8 861 72.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1260.0 862 71.9
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1257.7 865 71.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1256.5 861 72.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1256.5 861 72.0
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1256.5 831 75.2
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1251.1 868 74.2
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1250.3 862 74.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1249.2 868 72.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1248.4 863 71.3
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1248.0 862 70.9
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1246.1 868 74.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1244.6 868 74.5
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1242.3 866 70.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1241.5 863 70.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 863 70.7
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1240.3 867 70.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1237.6 869 73.1
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1237.2 868 70.4
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1231.5 867 71.3
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1230.7 861 70.7
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1227.6 861 69.6
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1224.5 867 70.6
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1223.8 867 69.8
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1223.4 862 70.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1222.2 842 73.3
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1220.3 861 69.7
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1210.7 875 72.2
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1202.6 861 72.1
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1199.1 863 71.3
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1197.2 861 69.6
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1196.0 917 69.7
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1184.1 859 70.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1183.3 932 64.9
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 864 71.5
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1167.5 862 68.7
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1166.8 865 67.5
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1166.8 860 66.5
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1162.5 860 65.9
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1162.1 860 66.2
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1160.6 863 65.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 860 65.9
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1155.2 860 65.9
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1155.2 860 65.8
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1155.2 863 65.2
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1154.4 868 66.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1154.4 865 66.6
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1153.7 860 65.7
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1153.7 873 66.4
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 863 65.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1152.5 860 65.7
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1152.1 860 65.7
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1150.6 1007 59.9
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 0.0e+00 1150.2 627 95.7
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1143.6 863 64.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1138.3 907 62.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1123.6 860 66.7
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1121.3 869 63.8
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1120.9 860 64.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1107.4 951 61.1
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1097.8 783 71.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1097.4 879 62.1
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1091.6 892 63.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.2e-304 1048.9 946 62.8
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.8e-303 1045.8 865 59.9
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.6e-299 1031.2 793 69.4
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.1e-295 1020.0 750 71.7
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 5.0e-293 1011.1 695 72.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.1e-292 1010.0 890 59.6
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 5.5e-276 954.5 650 72.8
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.6e-267 926.4 881 52.4
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.5e-260 902.5 880 51.9
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.1e-259 897.9 874 51.4
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 4.0e-226 788.9 871 45.1
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.7e-214 749.6 882 50.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 7.9e-206 721.5 558 67.0
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.7e-200 703.7 959 42.5
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.2e-199 699.5 584 63.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.1e-196 691.0 495 70.1
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 4.5e-177 625.9 381 76.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.9e-176 623.2 486 66.0
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.9e-175 620.5 847 43.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 5.3e-170 602.4 481 60.3
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 8.0e-166 588.6 501 58.7
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 5.2e-165 585.9 443 65.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.1e-146 523.1 327 75.8
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-125 454.9 378 60.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.3e-120 437.6 614 42.3
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.2e-115 421.0 236 87.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 6.5e-83 313.2 168 87.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 8.4e-75 286.2 387 44.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 6.1e-73 280.0 621 29.0
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 9.4e-66 256.1 648 29.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.4e-53 214.9 216 53.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 5.9e-36 157.1 541 26.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 4.2e-34 151.0 128 59.4
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-32 146.0 125 58.4
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-31 142.9 120 57.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.2e-30 138.7 655 20.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-28 132.9 97 59.8
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.5e-28 131.3 94 61.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 5.9e-20 104.0 111 52.3
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.0e-16 91.3 130 42.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.8e-16 90.5 42 90.5
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 3.7e-14 84.7 85 48.2
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 4.7e-09 67.8 44 70.5
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-06 59.3 42 54.8
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.9e-06 58.5 28 89.3


User provided reference genes

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