Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.2e-82 309.7 242 100.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.5e-48 196.1 159 64.8
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.0e-47 194.5 159 64.8
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.0e-47 194.5 157 64.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.8e-47 193.7 153 68.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.3e-47 193.4 158 65.8
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 3.0e-47 193.0 160 65.0
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 3.0e-47 193.0 160 65.0
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 3.0e-47 193.0 158 65.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.9e-47 192.6 153 66.0
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.9e-47 192.6 152 66.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 5.1e-47 192.2 160 65.0
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 5.1e-47 192.2 160 65.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.1e-47 192.2 153 67.3
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 6.7e-47 191.8 160 64.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 6.7e-47 191.8 159 65.4
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.7e-47 191.4 162 64.2
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 8.7e-47 191.4 158 66.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.1e-46 191.0 160 64.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.1e-46 191.0 153 65.4
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.1e-46 191.0 153 65.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.5e-46 190.7 153 65.4
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.5e-46 190.7 158 65.8
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.5e-46 190.7 145 67.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 3.3e-46 189.5 160 63.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.3e-46 189.1 160 65.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 5.6e-46 188.7 157 64.3
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.6e-46 188.7 158 63.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 5.6e-46 188.7 160 65.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 5.6e-46 188.7 160 62.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 7.4e-46 188.3 157 65.0
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 9.6e-46 188.0 160 62.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 9.6e-46 188.0 154 65.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 9.6e-46 188.0 159 64.2
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.6e-46 188.0 160 63.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.3e-45 187.6 157 65.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.3e-45 187.6 160 63.8
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.6e-45 187.2 158 63.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.1e-45 186.8 161 63.4
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.1e-45 186.8 158 64.6
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.1e-45 186.8 155 64.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 2.8e-45 186.4 154 64.3
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.8e-45 186.4 144 66.0
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.8e-45 186.4 162 63.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 2.8e-45 186.4 157 63.7
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.8e-45 186.4 160 62.5
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.8e-45 186.4 158 63.9
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.7e-45 186.0 160 61.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.7e-45 186.0 160 63.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.8e-45 185.7 155 63.9
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.8e-45 185.7 160 63.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.8e-45 185.7 154 64.9
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 6.2e-45 185.3 146 66.4
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 6.2e-45 185.3 146 67.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 6.2e-45 185.3 146 66.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 8.2e-45 184.9 155 65.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.2e-45 184.9 151 64.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 8.2e-45 184.9 145 68.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.1e-44 184.5 146 66.4
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.1e-44 184.5 158 62.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.1e-44 184.5 158 63.9
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.1e-44 184.5 156 63.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.4e-44 184.1 146 66.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.4e-44 184.1 146 65.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.4e-44 184.1 146 65.8
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.4e-44 184.1 146 65.8
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.4e-44 184.1 146 65.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.4e-44 184.1 141 67.4
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.8e-44 183.7 158 61.4
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.8e-44 183.7 154 65.6
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.8e-44 183.7 157 62.4
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.8e-44 183.7 157 62.4
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.8e-44 183.7 160 61.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-44 183.3 156 62.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-44 183.3 158 63.3
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-44 183.3 156 62.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-44 183.3 158 63.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.4e-44 183.3 148 66.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.4e-44 183.3 147 64.6
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-44 183.0 156 62.2
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.1e-44 183.0 156 62.2
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.1e-44 183.0 156 62.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.1e-44 183.0 147 66.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.1e-44 183.0 146 65.8
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.1e-44 183.0 157 64.3
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 5.3e-44 182.2 156 62.2
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 5.3e-44 182.2 156 62.2
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 5.3e-44 182.2 158 61.4
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.3e-44 182.2 160 62.5
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 6.9e-44 181.8 156 62.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 6.9e-44 181.8 154 62.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 6.9e-44 181.8 154 62.3
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.9e-44 181.8 145 64.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-43 181.0 154 63.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.2e-43 181.0 160 60.0
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.2e-43 181.0 161 63.4
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.5e-43 180.6 164 62.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.0e-43 180.3 161 63.4
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.0e-43 180.3 148 66.2
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.0e-43 180.3 160 61.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 2.0e-43 180.3 147 65.3
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 2.6e-43 179.9 158 62.0
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.6e-43 179.9 143 67.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 2.6e-43 179.9 154 63.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.6e-43 179.9 154 63.6
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.6e-43 179.9 146 64.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.6e-43 179.9 139 68.3
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.6e-43 179.9 157 63.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.4e-43 179.5 156 61.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.4e-43 179.5 154 63.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.4e-43 179.5 154 63.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.4e-43 179.5 146 63.7
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.5e-43 179.1 157 62.4
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.5e-43 179.1 162 61.1
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.5e-43 179.1 162 61.1
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.5e-43 179.1 160 61.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.8e-43 178.7 164 61.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 5.8e-43 178.7 164 62.2
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.0e-42 177.9 148 64.2
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.0e-42 177.9 162 61.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.0e-42 177.9 163 58.9
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-42 177.6 154 63.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.2e-42 176.8 159 60.4
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.2e-42 176.8 150 63.3
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.9e-42 176.4 150 64.0
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.9e-42 176.4 155 63.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 4.9e-42 175.6 147 63.9
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 8.4e-42 174.9 146 64.4
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.4e-42 174.9 151 62.3
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.4e-42 174.9 151 62.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-41 174.5 151 62.9
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.4e-41 174.1 150 63.3
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 7.1e-41 171.8 151 63.6
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.2e-40 171.0 135 64.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 5.1e-39 165.6 161 58.4
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.3e-38 162.9 155 60.6
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.3e-37 161.0 130 66.2
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 5.5e-33 145.6 131 61.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-31 141.0 157 52.9
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-31 141.0 157 52.9
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-31 139.4 152 52.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.9e-31 139.4 94 71.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 8.8e-31 138.3 126 61.9
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.5e-30 136.7 110 66.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.5e-30 136.7 126 61.1
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-30 136.7 115 64.3
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.3e-29 132.1 123 55.3
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.1e-28 128.3 153 51.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.6e-27 126.7 157 49.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-26 123.2 152 49.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-26 123.2 152 49.3
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-26 123.2 152 49.3
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.5e-25 120.2 152 48.7
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 3.2e-25 119.8 155 50.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.2e-24 117.9 135 51.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.6e-24 116.3 92 59.8
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.7e-24 115.9 95 66.3
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 2.4e-12 77.0 107 43.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.2e-09 66.2 50 68.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.2e-08 64.7 66 51.5
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.0e-07 59.7 139 34.5


User provided reference genes

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