Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 0.0e+00 1965.3 1197 100.0
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.1e-40 173.3 561 28.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 6.1e-39 167.5 558 28.3
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.8e-38 166.0 529 27.0
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.9e-37 162.5 530 27.0
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 9.7e-37 160.2 532 27.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 2.2e-36 159.1 526 26.8
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 2.8e-36 158.7 549 27.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 2.8e-36 158.7 528 26.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.4e-35 156.4 525 26.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.4e-35 156.4 536 26.1
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 3.1e-35 155.2 543 26.3
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 3.1e-35 155.2 534 26.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 3.1e-35 155.2 536 26.7
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 4.1e-35 154.8 525 26.7
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 4.1e-35 154.8 528 26.7
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 4.1e-35 154.8 525 26.7
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.9e-35 154.1 537 26.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 6.9e-35 154.1 534 26.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 9.1e-35 153.7 528 26.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 9.1e-35 153.7 534 26.4
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 9.1e-35 153.7 527 26.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 9.1e-35 153.7 537 26.6
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 2.0e-34 152.5 514 26.3
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.4e-34 151.8 528 26.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 4.5e-34 151.4 537 26.1
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 4.5e-34 151.4 517 26.1
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 5.9e-34 151.0 523 26.2
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 5.9e-34 151.0 523 26.4
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 5.9e-34 151.0 537 26.1
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 7.7e-34 150.6 537 26.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.2e-33 149.1 545 26.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 2.2e-33 149.1 506 26.3
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.8e-33 148.3 542 25.8
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 5.0e-33 147.9 545 27.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 6.5e-33 147.5 539 26.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.5e-33 147.5 563 26.3
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 1.1e-32 146.7 522 25.9
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 1.1e-32 146.7 513 25.9
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.4e-32 146.4 524 26.9
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 1.4e-32 146.4 521 25.7
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 1.9e-32 146.0 539 25.8
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 1.9e-32 146.0 539 25.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 2.5e-32 145.6 538 26.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 2.5e-32 145.6 510 26.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 3.2e-32 145.2 539 26.2
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 3.2e-32 145.2 539 26.2
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.2e-32 145.2 539 26.3
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 4.2e-32 144.8 537 25.7
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 4.2e-32 144.8 523 24.7
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 5.5e-32 144.4 541 26.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 5.5e-32 144.4 523 25.8
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 7.2e-32 144.1 545 26.8
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 7.2e-32 144.1 541 26.2
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 7.2e-32 144.1 523 24.7
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 7.2e-32 144.1 538 26.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 9.4e-32 143.7 524 25.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 1.6e-31 142.9 528 26.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 2.1e-31 142.5 560 23.8
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 2.1e-31 142.5 540 25.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 4.7e-31 141.4 567 24.7
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.7e-31 141.4 538 25.8
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 6.1e-31 141.0 541 25.7
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 1.0e-30 140.2 543 24.7
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.4e-30 139.8 552 25.9
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.4e-30 139.8 543 24.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 1.8e-30 139.4 535 25.0
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 1.8e-30 139.4 541 25.1
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 2.3e-30 139.0 563 25.2
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 3.0e-30 138.7 538 25.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 3.9e-30 138.3 572 24.8
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 5.1e-30 137.9 536 24.8
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 8.8e-30 137.1 513 26.9
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 1.1e-29 136.7 535 24.7
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.5e-29 136.3 499 25.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 2.0e-29 136.0 560 25.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 2.0e-29 136.0 541 25.1
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.6e-29 135.6 541 25.9
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 2.6e-29 135.6 537 24.2
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.6e-29 135.6 549 25.7
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 3.3e-29 135.2 527 25.6
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 4.4e-29 134.8 569 24.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.7e-28 132.9 538 24.9
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 1.7e-28 132.9 556 26.6
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 3.7e-28 131.7 363 30.6
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 4.8e-28 131.3 348 30.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 4.8e-28 131.3 348 30.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 6.3e-28 131.0 319 30.7
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.1e-27 130.2 543 25.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 2.4e-27 129.0 491 25.7
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 3.1e-27 128.6 542 25.3
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 1.5e-26 126.3 523 25.2
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 2.0e-26 125.9 368 28.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 2.0e-26 125.9 363 29.8
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.6e-26 125.6 573 24.1
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 6.5e-25 120.9 603 23.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.4e-24 119.8 277 30.0
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.4e-24 119.8 369 27.4
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.6e-23 116.3 406 26.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 8.0e-23 114.0 520 25.2
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.8e-22 112.8 544 26.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.3e-22 112.5 324 28.1
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 2.0e-21 109.4 515 26.4
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 9.7e-21 107.1 399 28.6
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.2e-18 100.1 172 33.7
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.9e-18 97.8 259 31.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.8e-17 95.1 181 33.1
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 6.5e-17 94.4 363 26.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 9.4e-16 90.5 131 37.4
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.1e-15 89.4 411 23.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.4e-14 86.7 119 35.3
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.7e-13 81.3 129 31.0
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.5e-13 80.9 140 32.9
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 6.3e-12 77.8 362 24.0
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.7e-09 69.7 89 36.0
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.1e-08 67.0 515 19.8
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.1e-08 67.0 190 26.3
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 3.2e-08 65.5 95 35.8


User provided reference genes

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