Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 3.6e-189 665.2 466 100.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.7e-24 117.1 191 34.6
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.7e-24 117.1 191 34.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.1e-23 115.5 191 33.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.4e-23 115.2 191 34.6
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.4e-23 115.2 190 34.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.4e-23 114.4 191 33.0
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-23 113.6 190 32.1
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.0e-23 113.6 190 32.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.3e-23 113.2 191 35.6
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.2e-22 112.1 191 31.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.2e-22 112.1 191 35.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.5e-22 111.7 191 32.5
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.5e-22 111.7 190 32.1
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.5e-22 111.7 191 35.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.0e-22 111.3 190 33.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-22 111.3 190 33.7
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.0e-22 111.3 190 32.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.6e-22 110.9 187 35.3
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 2.6e-22 110.9 190 34.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.6e-22 110.9 190 34.2
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.6e-22 110.9 191 32.5
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 3.4e-22 110.5 191 33.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.4e-22 110.5 191 34.0
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 3.4e-22 110.5 190 34.7
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.5e-22 110.2 198 33.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 4.5e-22 110.2 190 32.6
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.5e-22 110.2 194 31.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.5e-22 110.2 191 33.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 5.8e-22 109.8 191 31.9
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.8e-22 109.8 190 32.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 7.6e-22 109.4 190 33.2
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.0e-21 109.0 190 33.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.0e-21 109.0 191 31.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.0e-21 109.0 189 32.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.7e-21 108.2 188 32.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.7e-21 108.2 190 32.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.7e-21 108.2 191 32.5
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.7e-21 108.2 191 32.5
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.2e-21 107.8 191 35.1
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.9e-21 107.5 191 33.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.8e-21 107.1 191 32.5
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.8e-21 107.1 197 33.0
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.9e-21 106.7 191 33.0
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.9e-21 106.7 191 34.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.9e-21 106.7 191 32.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 4.9e-21 106.7 191 31.4
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 8.4e-21 105.9 190 33.2
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 8.4e-21 105.9 190 31.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.4e-21 105.9 187 32.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 8.4e-21 105.9 190 32.6
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-20 105.5 191 31.9
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.1e-20 105.5 190 32.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-20 105.1 191 33.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.4e-20 105.1 191 33.0
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.4e-20 105.1 190 31.6
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.9e-20 104.8 190 32.6
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.9e-20 104.8 190 30.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.5e-20 104.4 190 31.1
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.5e-20 104.4 190 32.1
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.2e-20 104.0 191 33.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.2e-20 104.0 190 32.1
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 3.2e-20 104.0 190 30.0
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.2e-20 103.6 191 31.4
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.2e-20 103.6 188 31.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.2e-20 103.6 191 31.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 4.2e-20 103.6 185 31.4
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.2e-20 103.6 190 33.7
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 5.5e-20 103.2 190 30.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.1e-20 102.8 193 30.1
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 9.3e-20 102.4 190 30.5
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 9.3e-20 102.4 191 31.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 9.3e-20 102.4 191 31.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 9.3e-20 102.4 191 31.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 9.3e-20 102.4 191 31.4
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.3e-20 102.4 188 32.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 9.3e-20 102.4 190 31.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.2e-19 102.1 191 30.9
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.2e-19 102.1 191 30.9
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.2e-19 102.1 191 30.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-19 102.1 186 33.9
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.6e-19 101.7 191 32.5
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.1e-19 101.3 191 30.9
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-19 101.3 188 34.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.1e-19 101.3 190 29.5
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.7e-19 100.9 191 31.9
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.7e-19 100.9 190 33.7
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-19 100.9 190 30.5
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-19 100.9 190 30.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.5e-19 100.5 191 30.9
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.5e-19 100.5 190 30.5
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.5e-19 100.5 190 31.6
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 4.6e-19 100.1 198 34.3
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 6.0e-19 99.8 188 33.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.0e-19 99.8 187 32.1
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 7.9e-19 99.4 191 30.4
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.9e-19 99.4 189 30.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 7.9e-19 99.4 191 30.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-18 99.0 191 30.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.0e-18 99.0 191 31.9
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-18 99.0 190 33.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.0e-18 99.0 190 30.0
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.0e-18 99.0 191 31.4
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.0e-18 99.0 190 31.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-18 98.2 189 30.2
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.8e-18 98.2 189 31.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.3e-18 97.8 190 31.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.3e-18 97.8 190 31.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 5.1e-18 96.7 189 29.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-18 96.3 190 29.5
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.7e-18 96.3 191 30.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.7e-18 95.9 189 29.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.7e-18 95.9 189 29.6
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-17 95.5 191 30.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.1e-17 95.5 190 30.5
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-17 95.5 190 30.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-17 95.1 191 30.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.5e-17 95.1 191 30.4
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-17 95.1 190 30.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-17 94.7 188 30.9
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-17 94.7 188 30.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.9e-17 94.7 186 30.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.5e-17 94.4 188 30.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.5e-17 94.4 189 29.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.3e-17 94.0 188 31.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 4.3e-17 93.6 191 31.4
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.3e-17 93.6 174 33.9
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 7.4e-17 92.8 147 38.8
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 9.6e-17 92.4 191 29.3
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-16 92.0 190 27.9
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.6e-16 91.7 190 29.5
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.7e-16 90.5 189 30.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-15 89.0 189 27.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-15 89.0 189 27.5
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.8e-15 88.2 192 31.8
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 6.9e-15 86.3 182 30.8
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.5e-14 83.6 191 27.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 5.9e-14 83.2 144 33.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.9e-14 83.2 144 33.3
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 7.6e-14 82.8 148 31.1
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.0e-13 82.4 135 33.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.0e-13 82.4 154 32.5
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-13 82.0 110 37.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.7e-13 81.6 142 31.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.7e-13 81.6 145 32.4
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.8e-13 80.5 171 32.7
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.8e-13 80.5 183 26.8
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 5.0e-13 80.1 140 35.7
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 5.0e-13 80.1 133 33.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 5.0e-13 80.1 135 32.6
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-12 79.0 137 31.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-12 78.6 190 27.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-12 78.6 99 38.4
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.2e-12 77.4 180 26.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 5.5e-12 76.6 189 28.0
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.7e-11 74.3 192 28.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.7e-11 74.3 100 39.0
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 3.0e-10 70.9 190 25.8
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.7e-10 69.3 105 37.1
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.5e-09 68.6 190 24.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.6e-08 65.1 175 26.3
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.2e-08 64.7 92 35.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-08 63.5 99 30.3
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 5.9e-06 56.6 53 47.2


User provided reference genes

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