Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 3.7e-226 788.1 470 100.0
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 3.0e-50 203.8 326 39.9
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 3.3e-49 200.3 326 39.3
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 3.3e-49 200.3 327 38.5
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 1.3e-48 198.4 323 39.3
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 4.8e-48 196.4 330 38.2
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 1.1e-47 195.3 328 38.1
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 1.4e-47 194.9 326 38.7
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 3.1e-47 193.7 323 40.2
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 3.1e-47 193.7 329 38.6
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 5.3e-47 193.0 329 38.6
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 6.9e-47 192.6 325 39.1
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 6.9e-47 192.6 331 38.7
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 6.9e-47 192.6 322 39.4
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 9.0e-47 192.2 311 39.9
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 1.5e-46 191.4 321 39.6
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 2.0e-46 191.0 322 38.8
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 3.4e-46 190.3 326 38.3
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 7.6e-46 189.1 324 38.3
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 1.0e-45 188.7 321 38.0
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 1.3e-45 188.3 330 37.9
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.3e-45 188.3 324 37.3
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 1.3e-45 188.3 320 38.4
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 2.2e-45 187.6 321 37.7
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 2.2e-45 187.6 320 39.4
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 2.9e-45 187.2 336 37.8
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 2.9e-45 187.2 320 38.8
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 2.9e-45 187.2 320 38.8
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 2.9e-45 187.2 320 38.8
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 2.9e-45 187.2 322 38.8
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 2.9e-45 187.2 322 38.5
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 3.8e-45 186.8 318 38.7
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 3.8e-45 186.8 324 38.3
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 5.0e-45 186.4 324 36.7
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 6.5e-45 186.0 320 38.4
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 6.5e-45 186.0 324 38.3
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 6.5e-45 186.0 324 36.7
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 8.4e-45 185.7 320 38.4
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 8.4e-45 185.7 320 38.4
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 8.4e-45 185.7 320 38.4
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 1.1e-44 185.3 318 39.3
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.1e-44 185.3 333 37.2
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 1.1e-44 185.3 324 36.7
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 1.4e-44 184.9 322 38.5
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.4e-44 184.9 333 37.5
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.4e-44 184.9 324 37.0
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 1.9e-44 184.5 320 38.4
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 1.9e-44 184.5 324 37.7
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 1.9e-44 184.5 333 37.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.9e-44 184.5 333 37.2
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 1.9e-44 184.5 324 37.7
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 2.5e-44 184.1 321 37.7
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 2.5e-44 184.1 323 36.2
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 3.2e-44 183.7 333 38.1
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 3.2e-44 183.7 326 38.0
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 3.2e-44 183.7 322 37.6
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 4.2e-44 183.3 320 38.4
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 4.2e-44 183.3 334 37.4
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 5.5e-44 183.0 318 37.4
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 7.1e-44 182.6 326 36.5
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 7.1e-44 182.6 327 38.2
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 9.3e-44 182.2 318 37.1
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 9.3e-44 182.2 318 37.1
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 9.3e-44 182.2 323 36.8
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 9.3e-44 182.2 318 38.1
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 9.3e-44 182.2 320 38.8
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 1.2e-43 181.8 320 37.8
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 1.6e-43 181.4 318 37.1
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 1.6e-43 181.4 324 37.3
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 2.7e-43 180.6 324 36.1
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 3.5e-43 180.3 318 38.1
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 3.5e-43 180.3 324 37.3
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 4.6e-43 179.9 305 37.7
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 4.6e-43 179.9 321 38.9
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 6.1e-43 179.5 322 37.9
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 7.9e-43 179.1 333 36.6
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 7.9e-43 179.1 320 37.5
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.3e-42 178.3 324 36.1
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 1.8e-42 177.9 324 35.8
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 1.8e-42 177.9 306 38.2
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 2.3e-42 177.6 308 37.3
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 2.3e-42 177.6 321 37.4
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 2.3e-42 177.6 346 34.4
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 3.0e-42 177.2 324 36.1
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 3.9e-42 176.8 304 37.8
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.3e-40 171.8 333 35.4
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 4.8e-40 169.9 320 37.8
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 6.3e-40 169.5 326 36.5
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 1.8e-39 167.9 354 37.0
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 4.1e-39 166.8 304 36.2
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 1.5e-38 164.9 174 49.4
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 7.7e-38 162.5 334 35.3
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 2.2e-37 161.0 196 42.9
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 1.9e-36 157.9 330 35.2
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 2.5e-36 157.5 193 43.0
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 1.2e-35 155.2 323 32.8
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 2.3e-34 151.0 289 35.3
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 8.8e-34 149.1 292 37.0
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 7.4e-33 146.0 288 35.4
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 4.8e-32 143.3 291 34.7
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 6.3e-32 142.9 181 43.6
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 2.4e-31 141.0 397 31.0
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 3.4e-30 137.1 292 32.9
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 5.0e-29 133.3 156 43.6
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 3.2e-28 130.6 165 46.7
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 5.1e-26 123.2 158 41.1
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 4.4e-25 120.2 251 31.5
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 3.7e-24 117.1 236 34.3
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 1.8e-23 114.8 325 30.5
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 5.0e-21 106.7 217 34.6
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 5.0e-21 106.7 223 32.7
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.2e-19 102.1 217 33.6
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 2.2e-16 91.3 189 29.6
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 1.8e-15 88.2 188 33.5
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 2.6e-14 84.3 182 34.6
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 8.0e-11 72.8 202 26.7
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 3.0e-10 70.9 58 60.3
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 1.5e-09 68.6 160 31.2
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 6.3e-08 63.2 72 54.2
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 8.3e-08 62.8 64 45.3
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.1e-07 62.4 53 56.6


User provided reference genes

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